View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0060-INSERTION-9 (Length: 625)

Name: NF0060-INSERTION-9
Description: NF0060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0060-INSERTION-9
NF0060-INSERTION-9
[»] chr1 (6 HSPs)
chr1 (86-423)||(39209574-39209911)
chr1 (420-596)||(39210097-39210271)
chr1 (1-131)||(24037060-24037194)
chr1 (1-59)||(39209906-39209964)
chr1 (528-625)||(24036791-24036888)
chr1 (181-228)||(24037276-24037323)
[»] chr8 (5 HSPs)
chr8 (1-423)||(27513870-27514302)
chr8 (528-625)||(27513624-27513721)
chr8 (420-501)||(27510719-27510799)
chr8 (1-134)||(8674890-8675027)
chr8 (569-625)||(8675189-8675245)
[»] chr2 (1 HSPs)
chr2 (538-607)||(38950770-38950839)
[»] chr6 (1 HSPs)
chr6 (533-600)||(18331878-18331945)
[»] chr3 (2 HSPs)
chr3 (557-600)||(9461255-9461298)
chr3 (186-228)||(9460971-9461013)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 86 - 423
Target Start/End: Complemental strand, 39209911 - 39209574
Alignment:
Q  86 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtctctgttctggttttttctgcgg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39209911 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttccttcatttcggtttccgtcactgttctggttttttctgcgg 39209812  T
Q  186 ttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattgga 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209811 ttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattgga 39209712  T
Q  286 tggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtgattgtttctcttgt 385  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209711 tggtggcaaggagaaggaggtgaggggaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtgattgtttctcttgt 39209612  T
Q  386 atagaaggaaaggaagaaaagagaagcttgcatcaatt 423  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39209611 atagaaggaaaggaagaaaagagaagcttgcatcaatt 39209574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 420 - 596
Target Start/End: Complemental strand, 39210271 - 39210097
Alignment:
Q  420 aattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaaatggagca 519  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |     
T  39210271 aattctttaaaaa-tgtccaaccgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaa-tggaacc 39210174  T
Q  520 tccatnataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaa 596  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39210173 tccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaaaaatcaa 39210097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 24037060 - 24037194
Alignment:
Q  1 cctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----agagtttagcatgaat 96  Q
    |||||||||||| ||||||||| |||| || | || ||||||||||||||||||||||  |||||| || |||||| |||     |||||||||||||||    
T  24037060 cctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttagcgtgtttctcaagcttcttctgacgcttgagtttagcatgaat 24037159  T
Q  97 ttcagatcgtttttctttgttcttactcatcgaag 131  Q
    ||||||||||||| |||| |||||| |||||||||    
T  24037160 ttcagatcgttttccttttttcttaatcatcgaag 24037194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39209964 - 39209906
Alignment:
Q  1 cctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagca 59  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39209964 cctcttcaccgagctcgatagctctttcaatagcagcatcgcgagctttcgacttagca 39209906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 528 - 625
Target Start/End: Original strand, 24036791 - 24036888
Alignment:
Q  528 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatc 625  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | ||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatc 24036888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 24037276 - 24037323
Alignment:
Q  181 tgcggttcctcttcccaccgaaagccaattagaaggtttgggaaggtt 228  Q
    |||| ||||||||||||||||||||| || | ||||||||||||||||    
T  24037276 tgcgcttcctcttcccaccgaaagccgatcataaggtttgggaaggtt 24037323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 27513870 - 27514302
Alignment:
Q  1 cctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttgaagagtttagcatgaatttca 100  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  27513870 cctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatgtttctaaaacttcttctgacgagtttagcatgaatttca 27513969  T
Q  101 gatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtctctgttctggttttttctgcggttcctcttcccaccg 200  Q
    |||||||||||||||||||||||||||| ||||| |||| |||||||||||  ||| | ||||||  |||||||||||||||||||||||||||||||||    
T  27513970 gatcgtttttctttgttcttactcatcggaggacggagcggttccttcattctggtcttcgtctcctttctggttttttctgcggttcctcttcccaccg 27514069  T
Q  201 aaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattggatggtggcaaggagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  27514070 aaagccaattagaaggtttgggaaggtttcacaatttgaacagacagaatttgaaaaatcagagaacaaagagaagaagatcggatggtggcaaggagaa 27514169  T
Q  301 ggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacac----------ctttatgttggtggtgattgtttctcttgtataga 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||| |||||||||||||||||||||    
T  27514170 ggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacttaggtttggatttatgttggtgatgattgtttctcttgtataga 27514269  T
Q  391 aggaaaggaagaaaagagaagcttgcatcaatt 423  Q
    ||||||||||||||||||||||||||| |||||    
T  27514270 aggaaaggaagaaaagagaagcttgcagcaatt 27514302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 528 - 625
Target Start/End: Original strand, 27513624 - 27513721
Alignment:
Q  528 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatc 625  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatc 27513721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 420 - 501
Target Start/End: Original strand, 27510719 - 27510799
Alignment:
Q  420 aattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 501  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510719 aattctttaaaa-atgtccaaccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 8675027 - 8674890
Alignment:
Q  1 cctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----agagtttagcatgaat 96  Q
    ||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||| ||||| | || |||||| |||     |||||||||||||||    
T  8675027 cctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttgagtttagcatgaat 8674928  T
Q  97 ttcagatcgtttttctttgttcttactcatcgaaggac 134  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  8674927 ttcagatcgtttttctttgttcttaatcattgaaggac 8674890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 569 - 625
Target Start/End: Complemental strand, 8675245 - 8675189
Alignment:
Q  569 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatc 625  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatc 8675189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 538 - 607
Target Start/End: Original strand, 38950770 - 38950839
Alignment:
Q  538 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaa 607  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaa 38950839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 533 - 600
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  533 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 600  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 557 - 600
Target Start/End: Complemental strand, 9461298 - 9461255
Alignment:
Q  557 atctaatctattcatattcaaattagttcaaaacaatcaaaatt 600  Q
    |||||||||| ||||||||||||||| |||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaatt 9461255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 9461013 - 9460971
Alignment:
Q  186 ttcctcttcccaccgaaagccaattagaaggtttgggaaggtt 228  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  9461013 ttcctgttcccaccgaaagccaatcagaaggtttgggaaggtt 9460971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 672 times since January 2019
Visitors: 1282