View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0061-INSERTION-2 (Length: 616)
Name: NF0061-INSERTION-2
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0061-INSERTION-2 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 204 - 616
Target Start/End: Complemental strand, 41920494 - 41920078
Alignment:
| Q |
204 |
ttaagttgttgatttccctcttccattaataaataaagtcattgcatattctccaaatttaataaataaatgcaacacataccttgcaagagaacttgca |
303 |
Q |
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| T |
41920494 |
ttaagttgttgatttccctcttccattaacaaataaagtcattgcatattctccaaatttaataaataaatgcaacacataccttgcaagagaacttgca |
41920395 |
T |
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| Q |
304 |
taatatttacacccgtccttcatcggacaagcattgcaatttgggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttctta |
403 |
Q |
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| T |
41920394 |
taatatttacacccgtccttcatcggacaagcattgcaatttgggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttctta |
41920295 |
T |
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| Q |
404 |
atggaaatgtaaaaatatattattttgaaagttaatatgtacctttccaaaggttatcaactgataatgcaattcatacctatccaagacaacatatatg |
503 |
Q |
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| T |
41920294 |
atggaaatgtaaaaatatattattttgaaagttaatatgtacctttccaaaggttatcaactgataatgcaattcatacctatacaagacaacatatatg |
41920195 |
T |
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| Q |
504 |
tttaagat----atattagccaaatacaaggctcaaataaattaaaaggatgacaggtagttacaatgtttgatgatcaagtttgcatagtcttggccaa |
599 |
Q |
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| T |
41920194 |
tttaagatatatatattagccaaatacaaggctcaaataaattaaaaggatgacaggtagttacaatgtttgatgatcaagtttgcatagtcttggccaa |
41920095 |
T |
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| Q |
600 |
agatattgttgaatttt |
616 |
Q |
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| T |
41920094 |
agatattgttgaatttt |
41920078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 41921052 - 41920902
Alignment:
| Q |
8 |
aactataggttcacattctttactttctttagtaaataatgttgatgtagaattgctccaaaaatcagagtatgggaaacaatgatccatttgggttgct |
107 |
Q |
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| T |
41921052 |
aactataggttcacattctttactttctttagtaaataatgttgatgtagaattgctccaataatcagagtatgggaaacaatgatccatttgggttgct |
41920953 |
T |
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| Q |
108 |
acaattgattgatctgtgcttgattttggtggtaaggcgagttttgtcctg |
158 |
Q |
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| T |
41920952 |
acaattgattgatctgtggttgattttggtggtaaggcgagttttgtcctg |
41920902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 247 - 616
Target Start/End: Complemental strand, 1689966 - 1689596
Alignment:
| Q |
247 |
gcatattctccaaatttaataaataaatgcaacacataccttgcaagagaacttgcataatatttacacccgtccttcatcggacaagcattgcaatttg |
346 |
Q |
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| T |
1689966 |
gcatattcttcaaatttaataaataaattcaacacataccttgcaagagaacttgcataatatttacaattgtccttcatcggacaagcattgcaatttg |
1689867 |
T |
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| Q |
347 |
ggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttcttaatggaaatgtaaaaatatattattttgaaagttaatatgtacc |
446 |
Q |
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| T |
1689866 |
ggtttctcttggtgcaaaaaacctgcaaaatgttttaaaatgattttgattttcttaatggaaaggtgtaaatgaattattttgaatgttaatatgtacc |
1689767 |
T |
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| Q |
447 |
tttccaaaggttatcaactgataatgcaattcatacctatccaagacaacat---atatgtttaagatatattagccaaatacaaggctcaaataaatta |
543 |
Q |
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| T |
1689766 |
tttccaaaggtaatcaactgataatgcaattcatacctatacaaggtaacatatcatatgggtaagatata-taacaaaatacaaaacttaaatacatta |
1689668 |
T |
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| Q |
544 |
aaaggatgacaggtagttacaatgtttgatgatcaagtttgcatagtcttggccaaagatattgttgaatttt |
616 |
Q |
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| T |
1689667 |
aaa-aatgtttgataattacaatgtatgatgatcaagtttgcataatcttggccacaaatattgttggatttt |
1689596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 1695117 - 1695039
Alignment:
| Q |
8 |
aactataggttcacattctttactttctttagtaaataatgttgatgtagaattgctccaaaaatcagagtatgggaaa |
86 |
Q |
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| T |
1695117 |
aactataggttcacattctttactcttttcggtaaataatgttgatgtagagttactccaacaatcaaagtatgggaaa |
1695039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 1305612 - 1305463
Alignment:
| Q |
337 |
ttgcaatttgggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttcttaatggaaatgtaaaaatatattattttgaaagtt |
436 |
Q |
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| T |
1305612 |
ttgcaatttgggtttttctttgtgcaaaaaacctgcaaaatgatttaagatgattttgattttcttaatccaaaggtaaaaatatattattctgaaagtt |
1305513 |
T |
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| Q |
437 |
aatatgtacctttccaaaggttatcaactgataatgcaattcatacctat |
486 |
Q |
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| T |
1305512 |
aacaagtacctttccaaaggttatcaagtgataatgcaattcatacctat |
1305463 |
T |
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