View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0061-INSERTION-2 (Length: 616)
Name: NF0061-INSERTION-2
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0061-INSERTION-2
[» ] chr5 (2 HSPs)
[» ] chr2 (2 HSPs)
Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 204 - 616
Target Start/End: Complemental strand, 41920494 - 41920078
Alignment:
Q
204
ttaagttgttgatttccctcttccattaataaataaagtcattgcatattctccaaatttaataaataaatgcaacacataccttgcaagagaacttgca
303
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41920494
ttaagttgttgatttccctcttccattaacaaataaagtcattgcatattctccaaatttaataaataaatgcaacacataccttgcaagagaacttgca
41920395
T
Q
304
taatatttacacccgtccttcatcggacaagcattgcaatttgggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttctta
403
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41920394
taatatttacacccgtccttcatcggacaagcattgcaatttgggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttctta
41920295
T
Q
404
atggaaatgtaaaaatatattattttgaaagttaatatgtacctttccaaaggttatcaactgataatgcaattcatacctatccaagacaacatatatg
503
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
41920294
atggaaatgtaaaaatatattattttgaaagttaatatgtacctttccaaaggttatcaactgataatgcaattcatacctatacaagacaacatatatg
41920195
T
Q
504
tttaagat----atattagccaaatacaaggctcaaataaattaaaaggatgacaggtagttacaatgtttgatgatcaagtttgcatagtcttggccaa
599
Q
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41920194
tttaagatatatatattagccaaatacaaggctcaaataaattaaaaggatgacaggtagttacaatgtttgatgatcaagtttgcatagtcttggccaa
41920095
T
Q
600
agatattgttgaatttt
616
Q
|||||||||||||||||
T
41920094
agatattgttgaatttt
41920078
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 41921052 - 41920902
Alignment:
Q
8
aactataggttcacattctttactttctttagtaaataatgttgatgtagaattgctccaaaaatcagagtatgggaaacaatgatccatttgggttgct
107
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
41921052
aactataggttcacattctttactttctttagtaaataatgttgatgtagaattgctccaataatcagagtatgggaaacaatgatccatttgggttgct
41920953
T
Q
108
acaattgattgatctgtgcttgattttggtggtaaggcgagttttgtcctg
158
Q
|||||||||||||||||| ||||||||||||||||||||||||||||||||
T
41920952
acaattgattgatctgtggttgattttggtggtaaggcgagttttgtcctg
41920902
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 247 - 616
Target Start/End: Complemental strand, 1689966 - 1689596
Alignment:
Q
247
gcatattctccaaatttaataaataaatgcaacacataccttgcaagagaacttgcataatatttacacccgtccttcatcggacaagcattgcaatttg
346
Q
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
T
1689966
gcatattcttcaaatttaataaataaattcaacacataccttgcaagagaacttgcataatatttacaattgtccttcatcggacaagcattgcaatttg
1689867
T
Q
347
ggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttcttaatggaaatgtaaaaatatattattttgaaagttaatatgtacc
446
Q
|||||||||| |||||||||||||||| || |||||| || |||||||||||||||||||||| || |||| ||||||||||| |||||||||||||
T
1689866
ggtttctcttggtgcaaaaaacctgcaaaatgttttaaaatgattttgattttcttaatggaaaggtgtaaatgaattattttgaatgttaatatgtacc
1689767
T
Q
447
tttccaaaggttatcaactgataatgcaattcatacctatccaagacaacat---atatgtttaagatatattagccaaatacaaggctcaaataaatta
543
Q
||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||| || | |||||||| || ||||| ||||
T
1689766
tttccaaaggtaatcaactgataatgcaattcatacctatacaaggtaacatatcatatgggtaagatata-taacaaaatacaaaacttaaatacatta
1689668
T
Q
544
aaaggatgacaggtagttacaatgtttgatgatcaagtttgcatagtcttggccaaagatattgttgaatttt
616
Q
||| ||| | || ||||||||| ||||||||||||||||||| ||||||||| | ||||||||| |||||
T
1689667
aaa-aatgtttgataattacaatgtatgatgatcaagtttgcataatcttggccacaaatattgttggatttt
1689596
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 1695117 - 1695039
Alignment:
Q
8
aactataggttcacattctttactttctttagtaaataatgttgatgtagaattgctccaaaaatcagagtatgggaaa
86
Q
|||||||||||||||||||||||| | || |||||||||||||||||||| || |||||| ||||| |||||||||||
T
1695117
aactataggttcacattctttactcttttcggtaaataatgttgatgtagagttactccaacaatcaaagtatgggaaa
1695039
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 1305612 - 1305463
Alignment:
Q
337
ttgcaatttgggtttctcttagtgcaaaaaacctgcagaacattttaagataattttgattttcttaatggaaatgtaaaaatatattattttgaaagtt
436
Q
||||||||||||||| |||| |||||||||||||||| || |||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||
T
1305612
ttgcaatttgggtttttctttgtgcaaaaaacctgcaaaatgatttaagatgattttgattttcttaatccaaaggtaaaaatatattattctgaaagtt
1305513
T
Q
437
aatatgtacctttccaaaggttatcaactgataatgcaattcatacctat
486
Q
|| | |||||||||||||||||||||| ||||||||||||||||||||||
T
1305512
aacaagtacctttccaaaggttatcaagtgataatgcaattcatacctat
1305463
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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