View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0061_high_4 (Length: 376)
Name: NF0061_high_4
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0061_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 1869349 - 1869683
Alignment:
| Q |
13 |
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga |
112 |
Q |
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| T |
1869349 |
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga |
1869448 |
T |
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| Q |
113 |
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
212 |
Q |
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| T |
1869449 |
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
1869547 |
T |
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| Q |
213 |
agagcattatgtaccttacaaatgatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt |
312 |
Q |
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| T |
1869548 |
agagcattatgtaccttacaaatgatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt |
1869647 |
T |
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| Q |
313 |
gggtcagtattttgagcaagatacccctttgtttct |
348 |
Q |
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| T |
1869648 |
gggtcagtattttgagcaagatacccttttgtttct |
1869683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 1916736 - 1916848
Alignment:
| Q |
236 |
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
335 |
Q |
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| T |
1916736 |
gatggtgatgtcaaggatggattttccaaaattcaagactctactgttaactactgaaagatgaagattttcaaggtaggtcagtattttgagcagaata |
1916835 |
T |
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| Q |
336 |
cccctttgtttct |
348 |
Q |
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| T |
1916836 |
ccattttgtttct |
1916848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 17488418 - 17488530
Alignment:
| Q |
236 |
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
335 |
Q |
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|||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
17488418 |
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata |
17488517 |
T |
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| Q |
336 |
cccctttgtttct |
348 |
Q |
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| T |
17488518 |
ccattttgtttct |
17488530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 17564796 - 17564684
Alignment:
| Q |
236 |
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata |
335 |
Q |
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|||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
17564796 |
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata |
17564697 |
T |
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| Q |
336 |
cccctttgtttct |
348 |
Q |
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| T |
17564696 |
ccattttgtttct |
17564684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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