View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0061_high_5 (Length: 267)
Name: NF0061_high_5
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0061_high_5
Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 1869268 - 1869124
Alignment:
Q
95
catgagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcg
194
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1869268
catgagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcg
1869169
T
Q
195
acacaatagcatgtgctagttacgtatgaaacaagtgtagttact
239
Q
|||||||||||||||||||||||||||||||||||||||||||||
T
1869168
acacaatagcatgtgctagttacgtatgaaacaagtgtagttact
1869124
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 1865198 - 1865057
Alignment:
Q
98
gagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcgaca
197
Q
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| || | |
T
1865198
gagattctaacttgctatggtatatataatgcagatgggtgatggctacaacatcacagtgaatgaattagtgaaaactctaagaaaggtgatctctaga
1865099
T
Q
198
caatagcatgtgctagttacgtatgaaacaagtgtagttact
239
Q
||||||||||||||||||||||||||||||||||||||||||
T
1865098
caatagcatgtgctagttacgtatgaaacaagtgtagttact
1865057
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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