View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0061_high_6 (Length: 266)
Name: NF0061_high_6
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0061_high_6
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 1869349 - 1869582
Alignment:
Q
13
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga
112
Q
||||||||||| |||||||||||||||| ||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
1869349
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga
1869448
T
Q
113
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt
212
Q
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
T
1869449
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt
1869547
T
Q
213
agagcattatgtaccttacaaatgatgatgatgtc
247
Q
||||||||||||||||||||||||||| |||||||
T
1869548
agagcattatgtaccttacaaatgatggtgatgtc
1869582
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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