View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0061_low_2 (Length: 549)
Name: NF0061_low_2
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0061_low_2
Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 13 - 514
Target Start/End: Original strand, 1869349 - 1869849
Alignment:
Q
13
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga
112
Q
||||||||||| |||||||||||||||| ||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
1869349
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga
1869448
T
Q
113
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt
212
Q
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
T
1869449
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt
1869547
T
Q
213
agagcattatgtaccttacaaatgatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt
312
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1869548
agagcattatgtaccttacaaatgatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt
1869647
T
Q
313
gggtcagtattttgagcaagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtatt
412
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
T
1869648
gggtcagtattttgagcaagatacccttttgtttctcacaatggactatgacaagtacatctttttttgacactcttgctttgatctctggaagagtatt
1869747
T
Q
413
atcacttgttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct
512
Q
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
T
1869748
atcacctgttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttct
1869847
T
Q
513
gc
514
Q
||
T
1869848
gc
1869849
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 236 - 410
Target Start/End: Original strand, 1916736 - 1916910
Alignment:
Q
236
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata
335
Q
|||| ||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||||| || |||||| ||||||||||||||||| |||
T
1916736
gatggtgatgtcaaggatggattttccaaaattcaagactctactgttaactactgaaagatgaagattttcaaggtaggtcagtattttgagcagaata
1916835
T
Q
336
cccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagta
410
Q
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
T
1916836
ccattttgtttctcacaatggactatgacaagtacatctttttgtaacacttttgctttgacctctggaagagta
1916910
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 512
Target Start/End: Original strand, 1916916 - 1916988
Alignment:
Q
440
tgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct
512
Q
|||| ||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||
T
1916916
tgaactcagtttggtccttttgttagtacaaatgttggatccagcttcttcttctagctctctcacacgttct
1916988
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 236 - 512
Target Start/End: Original strand, 17488418 - 17488694
Alignment:
Q
236
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata
335
Q
|||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||
T
17488418
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata
17488517
T
Q
336
cccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaattgtact
435
Q
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||
T
17488518
ccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtact
17488617
T
Q
436
catctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct
512
Q
|||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
T
17488618
catctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct
17488694
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 236 - 512
Target Start/End: Complemental strand, 17564796 - 17564520
Alignment:
Q
236
gatgatgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata
335
Q
|||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||
T
17564796
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata
17564697
T
Q
336
cccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaattgtact
435
Q
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||
T
17564696
ccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtact
17564597
T
Q
436
catctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct
512
Q
|||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||
T
17564596
catctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct
17564520
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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