View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0061_low_3 (Length: 442)
Name: NF0061_low_3
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0061_low_3
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 1869349 - 1869683
Alignment:
Q
13
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga
112
Q
||||||||||| |||||||||||||||| ||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
1869349
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga
1869448
T
Q
113
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt
212
Q
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
T
1869449
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt
1869547
T
Q
213
agagcattatgtaccttacaaatgatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt
312
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1869548
agagcattatgtaccttacaaatgatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggt
1869647
T
Q
313
gggtcagtattttgagcaagatacccctttgtttct
348
Q
|||||||||||||||||||||||||| |||||||||
T
1869648
gggtcagtattttgagcaagatacccttttgtttct
1869683
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 1916736 - 1916848
Alignment:
Q
236
gatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata
335
Q
|||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||||| || |||||| ||||||||||||||||| |||
T
1916736
gatggtgatgtcaaggatggattttccaaaattcaagactctactgttaactactgaaagatgaagattttcaaggtaggtcagtattttgagcagaata
1916835
T
Q
336
cccctttgtttct
348
Q
|| |||||||||
T
1916836
ccattttgtttct
1916848
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 17488418 - 17488530
Alignment:
Q
236
gatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata
335
Q
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||
T
17488418
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata
17488517
T
Q
336
cccctttgtttct
348
Q
|| |||||||||
T
17488518
ccattttgtttct
17488530
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 17564796 - 17564684
Alignment:
Q
236
gatggtgatgtcaaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagata
335
Q
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||
T
17564796
gatggtgatgtcaaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagata
17564697
T
Q
336
cccctttgtttct
348
Q
|| |||||||||
T
17564696
ccattttgtttct
17564684
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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