View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0061_low_5 (Length: 267)
Name: NF0061_low_5
Description: NF0061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0061_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 1869268 - 1869124
Alignment:
| Q |
95 |
catgagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcg |
194 |
Q |
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| T |
1869268 |
catgagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcg |
1869169 |
T |
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| Q |
195 |
acacaatagcatgtgctagttacgtatgaaacaagtgtagttact |
239 |
Q |
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| T |
1869168 |
acacaatagcatgtgctagttacgtatgaaacaagtgtagttact |
1869124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 1865198 - 1865057
Alignment:
| Q |
98 |
gagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaattagtgaaaactctcagaatggtgatatcgaca |
197 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| || | | |
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| T |
1865198 |
gagattctaacttgctatggtatatataatgcagatgggtgatggctacaacatcacagtgaatgaattagtgaaaactctaagaaaggtgatctctaga |
1865099 |
T |
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| Q |
198 |
caatagcatgtgctagttacgtatgaaacaagtgtagttact |
239 |
Q |
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| T |
1865098 |
caatagcatgtgctagttacgtatgaaacaagtgtagttact |
1865057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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