View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_high_1 (Length: 732)
Name: NF0062_high_1
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_high_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 709; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 1 - 732
Target Start/End: Original strand, 51359960 - 51360692
Alignment:
| Q |
1 |
tgagtctctatttcatacaactcttcagaattatcaggtactttcacactccaattcttaactgtgacaaccaacacctgcaagaataattac-aaaaga |
99 |
Q |
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| T |
51359960 |
tgagtctctatttcatacaactcttcagaattatcaggtactttcacactccaattcttaactgtgacaaccaacacctgcaagaataattactaaaaga |
51360059 |
T |
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| Q |
100 |
attagttaacacataattatttggagaaaatgaagaaaagggtacctgtaaaatactcaacaatggactctcccccggaattcgtttacgatagaatctc |
199 |
Q |
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| T |
51360060 |
attagttaacacataattatttggagaaaatgaagaaaagggtacctgtaaaatactcaacaatggactctccccaggaattcgtttacgatagaatctc |
51360159 |
T |
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| Q |
200 |
tttcccgcaacaatgcaaataagtgcagaggcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaag |
299 |
Q |
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| T |
51360160 |
tttccagcaacaatgcaaataagtgcagaggcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaag |
51360259 |
T |
|
| Q |
300 |
tgacacctaagctagcaccaattgtaatactaaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatc |
399 |
Q |
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| T |
51360260 |
tgacacctaagctagcaccaattgtaatactaaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatc |
51360359 |
T |
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| Q |
400 |
tgctcctagagcaggaacacaacctctgattccaccaccaccaagtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaa |
499 |
Q |
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| T |
51360360 |
tgctcctagagcaggaacacaacctctgattccaccaccaccaagtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaa |
51360459 |
T |
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| Q |
500 |
ctcttttttccacatagttctggctgaagtttctcatcatgggattgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaa |
599 |
Q |
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| T |
51360460 |
ctcttttttccacatagttctggctgaagtttctcatcatgggattgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaa |
51360559 |
T |
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| Q |
600 |
tgtcttgagtaagttaatcaaataacgaacttgtttaacgtaatactttaccaacaactgaattatgccaaagaggatgcatgtgttgagacgattcata |
699 |
Q |
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| T |
51360560 |
tgtcttgagtaagttaatcaaataatgaacttgtttaatgtaatactttaccaacaactgaattatgccaaagaggatgcatgtgttgagacgattcata |
51360659 |
T |
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| Q |
700 |
tatgtatcggagatgaaccctccaacgacagtc |
732 |
Q |
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| T |
51360660 |
tatgtatcggagatgaaccctccaacgacagtc |
51360692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 144 - 556
Target Start/End: Original strand, 51350750 - 51351145
Alignment:
| Q |
144 |
cctgtaaaatactcaacaatggactctcccccggaattcgtttacgatagaatctctttcccgcaacaatgcaaataagtgcagaggcagaacatgagag |
243 |
Q |
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| T |
51350750 |
cctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagag |
51350849 |
T |
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| Q |
244 |
agatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagctagcaccaattgtaatactaaacaaaaaccaa |
343 |
Q |
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| T |
51350850 |
agatataagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagcta-------------------acaaaaaccaa |
51350930 |
T |
|
| Q |
344 |
ttga----agaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacctctgattccaccacca |
439 |
Q |
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| T |
51350931 |
ttaatcaaagaagctagctagttggagacggtcctttggattcttgtcatcaaattgatcagctcctagagcaggaacacagcctttgatttcaccacca |
51351030 |
T |
|
| Q |
440 |
ccaagtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttctcatcat |
539 |
Q |
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| T |
51351031 |
ccaagtgcaagcaagtatatcgaagcgtagaagaacaaagcttttgtgacatgcaaacaactttgttttccac--agttgtggctgaagtttctcagcat |
51351128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 51350503 - 51350558
Alignment:
| Q |
42 |
tttcacactccaattcttaactgtgacaaccaacacctgcaagaataattacaaaa |
97 |
Q |
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| T |
51350503 |
tttcaccctccaattcttgactgtgacaaccagcaccttcaagaacaattacaaaa |
51350558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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