View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_high_8 (Length: 206)
Name: NF0062_high_8
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 50505463 - 50505621
Alignment:
| Q |
1 |
agattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataagaaaaatacaagctaaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505463 |
agattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataagaaaaatacaagctaaacaa |
50505562 |
T |
|
| Q |
101 |
aatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatga |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505563 |
aatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatga |
50505621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 28733769 - 28733614
Alignment:
| Q |
1 |
agattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataagaaaaatacaagctaaacaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| ||| ||||||| |||| ||||| ||||||||||||||||||||| |||| |||||| |
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| T |
28733769 |
agattgagaacaaagcacttcaaatcctgcaaaaatgttta---taattaataggcataaacaaagacattatctgataagaaaaatataagcaaaacaa |
28733673 |
T |
|
| Q |
101 |
aatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatga |
159 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |
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| T |
28733672 |
aatactaacatatcatggcctcatggggaatatataaatcattatctaaaatatgatga |
28733614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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