View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_low_16 (Length: 271)
Name: NF0062_low_16
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 33495176 - 33495336
Alignment:
| Q |
92 |
tatgcttacaatccaagaacatttttcctgattttctgaagatttgacacgagttggagaagcagctctcattgaatcaatccaagcattaactttactt |
191 |
Q |
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| T |
33495176 |
tatgcttacaatccaagaacatttttcctgattttctgaagatttgacacgagttggagaagcagctctcattgaatcaatccaagcattaactttactt |
33495275 |
T |
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| Q |
192 |
tcttctaatctcttagtaaaattcttatgagaaaaacccaaaaacccattaatcaaagcca |
252 |
Q |
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| T |
33495276 |
tcttctaatctcttagtaaaattcttacgagaaaaacccaaaaacccattaatcaaagcca |
33495336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33495067 - 33495119
Alignment:
| Q |
1 |
gctgaaggatgataaagctgcaagcacaaataataagaagtcaactaaaaatt |
53 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33495067 |
gctgaagggtgataaagctgcaagcacaaataataagaagtcaactaaaaatt |
33495119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 37980388 - 37980434
Alignment:
| Q |
129 |
gaagatttgacacgagttggagaagcagctctcattgaatcaatcca |
175 |
Q |
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| T |
37980388 |
gaagatttgacatgagttggagaagaagctctcatagaatcaatcca |
37980434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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