View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_low_18 (Length: 220)
Name: NF0062_low_18
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_low_18 |
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| [»] scaffold0031 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47650050 - 47650120
Alignment:
| Q |
1 |
atataaatacatataagttatcaagtcaatgacaaatataccaacaaaaggagatttgatattttatattt |
71 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650050 |
atataaatacatgtaagttatcaagtcaatgacaaatataccaacaaaaggagatttgatattttatattt |
47650120 |
T |
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Target: scaffold0031 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 92209 - 92276
Alignment:
| Q |
1 |
atataaatacatataagttatcaagtcaatgacaaatataccaacaaaa--ggagatttgatatttta |
66 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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|
| T |
92209 |
atataaatacatataagttatcaagtcaatgataaatataccaaaaaaaagggagatttgatatttta |
92276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 170773 - 170702
Alignment:
| Q |
1 |
atataaatacatataagttatcaagtcaatgacaaatatacca-acaaaaggagatttgatattttatattt |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |
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| T |
170773 |
atataaatacatataagttatcaagtcaatgacaaatatactaggaaaaaggagatttgatattatatattt |
170702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30754185 - 30754250
Alignment:
| Q |
1 |
atataaatacatataagttatcaagtcaatgacaaatataccaacaaaag-gagatttgatatttt |
65 |
Q |
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|||||| || |||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| |
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|
| T |
30754185 |
atataattagatataagttatcaagtcaatgataaatataccaaaaaaagagagattttatatttt |
30754250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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