View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_low_4 (Length: 569)
Name: NF0062_low_4
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_low_4 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 83 - 569
Target Start/End: Original strand, 28340930 - 28341416
Alignment:
| Q |
83 |
atcatcatttttggtacattggcggaaccaccaaaattatcatggttgatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtt |
182 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28340930 |
atcatcatttttggtacattggtggaaccaccaaaattatcatggttgatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtt |
28341029 |
T |
|
| Q |
183 |
tgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatgatttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtat |
282 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28341030 |
tgctgatgcttgcttcaagtaccagctccctggtgaagatcttaatgatttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtat |
28341129 |
T |
|
| Q |
283 |
gatcgtatgtgtcgcgcttctccaaagcagccggtaagattgaggctcttcctcttccctgttcgtgctaacaacaagaacggccacaattcaagaccta |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28341130 |
gatcgtatgtgtcgcgcttctccaaagcagccggtaagattgaggcttttcctcttccctgttcgtgctaacaacaagaacggccacaattcaagatctt |
28341229 |
T |
|
| Q |
383 |
acagtctccttgagttgctcaattccgttcacgttccaaagtttgaagattcatctcctccgccactggaagattcaactccacctcctcctccgccacc |
482 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28341230 |
acagtctctttgagttgctcaattccgttcacgttccaaaatttgaagattcatctcctccgccaatggaagattcaactccacctcctcctccgccacc |
28341329 |
T |
|
| Q |
483 |
ggaagattcatctccacctcctctgtcgtcgaaaaccacgaatcctgagttgagtcaggtgaaatgtccggagactttaccggattt |
569 |
Q |
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| T |
28341330 |
ggaagattcatctccacctcctccctcgttgacaaccatgaatcctgatttgagtcaggtggaatgtccggagactttaccggattt |
28341416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 295
Target Start/End: Original strand, 38443287 - 38443452
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
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|||||||||||||| |||||||||||| | | ||||||||| ||| |||| || | ||| |||||||||||| || |||| | |||||||| || ||| |
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| T |
38443287 |
gatcgtaatatcaacttctccgacctcatggcaaagctttcctcattcatggtttccaatgtttgcttcaagtatcaactccttggtgaagattttgatg |
38443386 |
T |
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| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtc |
295 |
Q |
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| T |
38443387 |
ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtc |
38443452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 297
Target Start/End: Complemental strand, 38182898 - 38182731
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
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|||||||||||||| ||||| |||||| | | ||||||||| | ||||||| | |||| |||||||||||| || || | | |||||||| | ||| |
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| T |
38182898 |
gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg |
38182799 |
T |
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| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtcgc |
297 |
Q |
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| T |
38182798 |
ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc |
38182731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 38185491 - 38185658
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
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|||||||||||||| ||||| |||||| | | ||||||||| | ||||||| | |||| |||||||||||| || || | | |||||||| | ||| |
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| T |
38185491 |
gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg |
38185590 |
T |
|
| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtcgc |
297 |
Q |
| |
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| T |
38185591 |
ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc |
38185658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 38188233 - 38188400
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
|
|||||||||||||| ||||| |||||| | | ||||||||| | ||||||| | |||| |||||||||||| || || | | |||||||| | ||| |
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| T |
38188233 |
gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg |
38188332 |
T |
|
| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtcgc |
297 |
Q |
| |
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||||||| | ||| | ||||| || |||||| | |||||||| ||||||||||||||||||||||| |
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| T |
38188333 |
ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc |
38188400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 297
Target Start/End: Complemental strand, 38210124 - 38209957
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
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|||||||||||||| ||||| |||||| | | ||||||||| | ||||||| | |||| |||||||||||| || || | | |||||||| | ||| |
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| T |
38210124 |
gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg |
38210025 |
T |
|
| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtcgc |
297 |
Q |
| |
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||||||| | ||| | ||||| || |||||| | |||||||| ||||||||||||||||||||||| |
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| T |
38210024 |
ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc |
38209957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 297
Target Start/End: Complemental strand, 38212866 - 38212699
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
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|||||||||||||| ||||| |||||| | | ||||||||| | ||||||| | |||| |||||||||||| || || | | |||||||| | ||| |
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| T |
38212866 |
gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatg |
38212767 |
T |
|
| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtcgc |
297 |
Q |
| |
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| T |
38212766 |
ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc |
38212699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 38215458 - 38215625
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
|
|||||||||||||| ||||| |||||| | | ||||||||| | ||||||| | |||| ||| |||||||| || |||| | |||||||| | ||| |
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| T |
38215458 |
gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgtttcaagtatcaactccttggtgaagatttggatg |
38215557 |
T |
|
| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtcgc |
297 |
Q |
| |
|
||||||| | ||| | ||||| || |||||| | |||||||| ||||||||||||||||||||||| |
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| T |
38215558 |
ctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgc |
38215625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 38453208 - 38453043
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
|
|||||||||||||| |||||||||||| | | ||||||||| | ||||||| | |||| |||||||||||| || |||| | |||||||| | ||| |
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| T |
38453208 |
gatcgtaatatcaacttctccgacctcatggcaaagctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatg |
38453109 |
T |
|
| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtc |
295 |
Q |
| |
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||||||| | ||| | ||||| || |||||| | |||||||| | |||||||||| |||||||| |
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|
| T |
38453108 |
ctttgatcccggtttataacgaagaagatctcaatcatatgatgttagagtatgatcatatgtgtc |
38453043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 295
Target Start/End: Original strand, 38169702 - 38169867
Alignment:
| Q |
130 |
gatcgtaatatcaaattctccgacctcgttgaaaagctttcttcaaccatgtttgctgatgcttgcttcaagtaccagctcccttgtgaagatcttaatg |
229 |
Q |
| |
|
|||||||||||||| ||||| |||||| | | ||||||||| | ||||||| | |||| |||||||||||| || |||| | |||||||| | ||| |
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|
| T |
38169702 |
gatcgtaatatcaacttctctgacctcatggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatg |
38169801 |
T |
|
| Q |
230 |
atttgatctccgttcacaacgatgatgatctcgaaaatatgatggtcgagtatgatcgtatgtgtc |
295 |
Q |
| |
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||||||| | || | ||||| || |||||| | |||| ||| ||||||||||||||||||||| |
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|
| T |
38169802 |
ctttgatcccaatttataacgaagaagatctcaatcatattatgttcgagtatgatcgtatgtgtc |
38169867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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