View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_low_5 (Length: 491)
Name: NF0062_low_5
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 49290742 - 49290940
Alignment:
| Q |
1 |
acacacaatgataaagaaacaaatcaataataaatagggacttacaattattttactggttttggttttgtcacggagtgggcgtacaaataccacagca |
100 |
Q |
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| T |
49290742 |
acacacaatgataaagaaacaaat-------aaatagggacttacaattattttactggttttggttttgtcacggagtgggcgtacaaataccacagca |
49290834 |
T |
|
| Q |
101 |
aaaggatcagattttccaattatatctttatttgttaagttctttgcctgcactagttttacatctagtgttccaacgggtttcaattctaggttactgt |
200 |
Q |
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| T |
49290835 |
aaaggatcagattttccaattatatctttatttgataagttctttgcctgcactagttttacatctagtgttccaacgggtttcaattctaggttactgt |
49290934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 49290992 - 49291123
Alignment:
| Q |
260 |
taatattcaaaacatgtagaaatgacaatgatataattaatttataattccaaaataaaatgcaatacgatcaatacatgccaacaaccaagatagcaat |
359 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290992 |
taatattcaaaacatgtagaaatgacaatgat---------ttataattccaaaataaaatgcaatacgatcaatacatgccaacaaccaagatagcaat |
49291082 |
T |
|
| Q |
360 |
caactctctcagaaaattgaagattcatcaacatgaatttg |
400 |
Q |
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| T |
49291083 |
caactctctcagaaaattgaagattcatcaacatgaatttg |
49291123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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