View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_low_6 (Length: 465)
Name: NF0062_low_6
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_low_6 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 47650074 - 47649908
Alignment:
| Q |
1 |
cttgataacttatatgtatttatattttgtgatgatgaaaatttgcttttagagagatcctgaaaccaaaaaggagcccaactataaggatttatggaga |
100 |
Q |
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| T |
47650074 |
cttgataacttacatgtatttatattttgtgatgatgaaaatttgcttttagagagatcctgaaaccaaaaaggagcccaactataaggatttatggaga |
47649975 |
T |
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| Q |
101 |
atgactcgcacaaacagcaatggagatggataaatgatgcttctaaggaagttcatgtatgacatcc |
167 |
Q |
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| T |
47649974 |
atgactcgcacaaacagcaatggagatggataaatgatgcttctaaggaagttcatgtatgacatcc |
47649908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 47649832 - 47649763
Alignment:
| Q |
243 |
atagacgaaggttgaagaaacttcttcagtttacttacaagctggatatggggacactgatgatgatgtc |
312 |
Q |
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| T |
47649832 |
atagacgaaggttgaagaaacttcttcagtttacttacaagctggatatggggacactgataaagatgtc |
47649763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 170749 - 170916
Alignment:
| Q |
1 |
cttgataacttatatgtatttatattttgtgatgatgaaaatttgcttttagagagatcctgaaaccaaaaaggagcccaactataaggatttatggaga |
100 |
Q |
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| T |
170749 |
cttgataacttatatgtatttatattttgcaatgatgaaaatttgcttttagagagatcccgaaaccaaaaaggaggctaactataaggatttatggaga |
170848 |
T |
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| Q |
101 |
atgactcgcacaaacagcaatggag-atggataaatgatgcttctaaggaagttcatgtatgacatcc |
167 |
Q |
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| T |
170849 |
atgactcacacaaacagcaatggagaatggataaatgatgcttctaaggaagttcatgtatggcatcc |
170916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 170995 - 171049
Alignment:
| Q |
249 |
gaaggttgaagaaacttcttcagtttacttacaagctggatatggggacactgat |
303 |
Q |
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| T |
170995 |
gaaggttgaagaaacttcttcagttttcttacaagctggatatgaggacactgat |
171049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 92233 - 92066
Alignment:
| Q |
1 |
cttgataacttatatgtatttatattttgtgatgatgaaaatttgcttttagagagatcctgaaaccaaaaaggagcccaactataaggatttatggaga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |
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| T |
92233 |
cttgataacttatatgtatttatattttgtgacgatgaaaatttgcttttagagagatcttgaaactgaaaaggagcacaactataaggatttatggaga |
92134 |
T |
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| Q |
101 |
atgactcgcacaaacagcaatggag-atggataaatgatgcttctaaggaagttcatgtatgacatcc |
167 |
Q |
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||||||| || ||||| ||| |||| |||||||||||||||||||||| | |||||||||||||||| |
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| T |
92133 |
atgactcacataaacaacaacggagaatggataaatgatgcttctaagaatattcatgtatgacatcc |
92066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30754209 - 30754153
Alignment:
| Q |
1 |
cttgataacttatatgtatttatattttgtgatgatgaaaatttgcttttagagaga |
57 |
Q |
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||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
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| T |
30754209 |
cttgataacttatatctaattatattttgtgatgatgaaaatatgcttttagagaga |
30754153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 30754116 - 30754076
Alignment:
| Q |
126 |
atggataaatgatgcttctaaggaagttcatgtatgacatc |
166 |
Q |
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| T |
30754116 |
atggataaatgacgcttctaaggaagttcatgtatgacatc |
30754076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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