View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0062_low_7 (Length: 426)
Name: NF0062_low_7
Description: NF0062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0062_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 10162498 - 10162110
Alignment:
| Q |
30 |
ccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctc |
129 |
Q |
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| T |
10162498 |
ccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctc |
10162399 |
T |
|
| Q |
130 |
tcttcaaaccctttcgaaagttcacctcttttcccttcatttttatcaaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgc |
229 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162398 |
tcttcaaacccttttgaaagttcacctcttttcccttcatttttatcaaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgc |
10162299 |
T |
|
| Q |
230 |
tttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatc |
329 |
Q |
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| T |
10162298 |
tttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatc |
10162199 |
T |
|
| Q |
330 |
aagccattccatgcatgagtgcctaccctttgaatctttcttctcctgatcaatgcttagagggttgaagggtcccactgccctatgct |
418 |
Q |
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| T |
10162198 |
aagccattccatgcatgagtgcctaccctttgaatctttcttctcctgatcaatggttagagggttgaagggtcccactgcccaatgct |
10162110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 1609496 - 1609111
Alignment:
| Q |
30 |
ccatccacaatgactcataaaccctcccgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaagcccattccttcaactctc |
129 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1609496 |
ccatccgcaatgactcataaaccctcctgttgaagggtggcttagaatttccaactggggtgcccaatccctcacaacaaaccccattccttcaactctc |
1609397 |
T |
|
| Q |
130 |
tcttcaaaccctttcgaaagttcacctcttttcccttcatttttatcaaagatgtctcctttatcagcatctctcaacacccaaataaactttatcttgc |
229 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1609396 |
tcttcaaacccttttgcaagttcacctcttttcccttcatttccatcaaatatgtctcctttatcagcatctctcaacacccaaatgaactttatcttgc |
1609297 |
T |
|
| Q |
230 |
tttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttgtttcttgtttatc |
329 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1609296 |
tttgttccaacccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttccaaaagatacatatataactgagtttggttcttgtttatc |
1609197 |
T |
|
| Q |
330 |
aagccattccatgcatgagtgcctaccctttgaatctttcttctcctgatcaatgcttagagggttgaagggtcccactgccctatgct |
418 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||| | |||||| | ||||||||||||||||| ||||||| ||||| |
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| T |
1609196 |
aagccattccatacataagtgcctaccctttgaatctttcttcttc---tcaatggtaagagggttgaagggtccaactgcccaatgct |
1609111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 37721784 - 37721664
Alignment:
| Q |
191 |
tatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttcc |
290 |
Q |
| |
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||||||||||||| || ||||||||||| ||| ||| ||||||| ||| ||| |||||| || | ||||| ||| ||| | |||| |||||| || || |
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| T |
37721784 |
tatcagcatctcttaatacccaaataaatttttgcttactttgttccaacccatttgcaagctctataatttgttcctcttttaaggctgttgtggtccc |
37721685 |
T |
|
| Q |
291 |
aaaagatacatatataactga |
311 |
Q |
| |
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|||||||| ||| || ||||| |
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| T |
37721684 |
aaaagatatataaattactga |
37721664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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