View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063-1-Insertion-2 (Length: 1020)

Name: NF0063-1-Insertion-2
Description: NF0063-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063-1-Insertion-2
NF0063-1-Insertion-2
[»] chr4 (16 HSPs)
chr4 (168-923)||(51364362-51365110)
chr4 (8-170)||(51360779-51360941)
chr4 (952-1013)||(51364310-51364371)
chr4 (581-662)||(32576949-32577034)
chr4 (774-821)||(1790690-1790737)
chr4 (581-662)||(49951514-49951599)
chr4 (596-646)||(2065073-2065123)
chr4 (596-658)||(29655571-29655633)
chr4 (581-647)||(37245768-37245838)
chr4 (691-737)||(10575273-10575319)
chr4 (596-662)||(18442048-18442114)
chr4 (691-737)||(24989758-24989804)
chr4 (362-400)||(53870213-53870251)
chr4 (581-639)||(26422526-26422588)
chr4 (597-662)||(28426404-28426469)
chr4 (597-662)||(49119301-49119366)
[»] chr8 (4 HSPs)
chr8 (596-662)||(11870484-11870550)
chr8 (581-662)||(477957-478042)
chr8 (596-646)||(3606656-3606706)
chr8 (581-647)||(13415224-13415294)
[»] chr6 (4 HSPs)
chr6 (581-662)||(11731570-11731655)
chr6 (581-661)||(28107340-28107424)
chr6 (596-653)||(15053085-15053142)
chr6 (691-736)||(15605819-15605864)
[»] scaffold0198 (1 HSPs)
scaffold0198 (596-662)||(20378-20444)
[»] chr3 (4 HSPs)
chr3 (596-662)||(2615703-2615769)
chr3 (581-661)||(48227569-48227653)
chr3 (581-662)||(53497233-53497318)
chr3 (581-660)||(647073-647156)
[»] chr7 (9 HSPs)
chr7 (581-647)||(29200871-29200941)
chr7 (596-662)||(24139231-24139297)
chr7 (596-662)||(44481307-44481373)
chr7 (581-647)||(16732134-16732204)
chr7 (581-647)||(17710268-17710338)
chr7 (691-736)||(17877715-17877760)
chr7 (581-647)||(24251640-24251710)
chr7 (596-647)||(30493526-30493577)
chr7 (581-643)||(9328522-9328588)
[»] chr5 (6 HSPs)
chr5 (581-662)||(20205156-20205241)
chr5 (774-816)||(42857321-42857363)
chr5 (581-643)||(22767193-22767259)
chr5 (581-662)||(25731009-25731094)
chr5 (596-662)||(11375423-11375489)
chr5 (596-662)||(15988650-15988716)
[»] chr1 (5 HSPs)
chr1 (596-662)||(4395378-4395444)
chr1 (624-662)||(2885474-2885512)
chr1 (598-659)||(4898524-4898585)
chr1 (581-647)||(5609540-5609610)
chr1 (598-643)||(23163373-23163418)
[»] chr2 (3 HSPs)
chr2 (581-647)||(34695820-34695890)
chr2 (581-647)||(34718232-34718302)
chr2 (581-643)||(9710156-9710222)
[»] scaffold0024 (1 HSPs)
scaffold0024 (774-829)||(96069-96124)


Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 168 - 923
Target Start/End: Complemental strand, 51365110 - 51364362
Alignment:
Q  168 tccgttttcggtttgacttgttggttgttcataaagtttcttttggctttatttgatttttgtatatcttggttcatgtgttctacttatttggttgcat 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51365110 tccgttttcggtttgacttgttggttgttcataaagtttcttttggctttatttgatttttgtatatcttggttcatgtgttctacttatttggttgcat 51365011  T
Q  268 atttcattttgatattccatggtgttctctctcttgtaaccttgaagtggtgtgtgaccgttgttcatacttgtttttccattttgcatgtttagtttca 367  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51365010 atttcattttgatattccatggtgttctctctcttgtaatcttgaagtggtgtgtgaccgttgttcatacttgtttttccattttgcatgtttagtttca 51364911  T
Q  368 tgtccttctaatttgtggaatgacaaggtggattgaagtggcgtgttccctttgtaatttatttttggatgtttaatgatttagtatcgaataatattgc 467  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||                 ||||||||||    
T  51364910 tgtccttctaatttgtggaatgacaaggtggattgaagtggtgtgttctctttgtaatttatttttggatgtt-----------------ataatattgc 51364828  T
Q  468 agttggagcggcactggcgttcgttggggtgggagcttgtaggattgcacggaagaa----taagtatatggttaagatacaaatgtttttccttaatac 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  51364827 agttggagcggcactggcgttcgttggggtgggagcttgtaggattgcacggaagaataagtaagtatatggttaagatacaaatgtttttccttaatac 51364728  T
Q  564 aaatgtatttgtgaagattacattccaacttctgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggcg 663  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  51364727 aaatgtatttgtgaagattacattccaacttgtgaagtttgttagaagacaaacgaatattgttgctcatactttagctagggcaacctgcccttgggcg 51364628  T
Q  664 tcaccgta-nnnnnnnnnnnnnnnnnngttgtattgaacattgattaattaatgataataggtaattttactttgttnnnnnnnnncggaataatggatg 762  Q
    ||||||||                   |||||||||||||||| || |||||||||||||| ||||||| |||  |           | |||||| ||||    
T  51364627 tcaccgtatttttttatttttattgttgttgtattgaacattggttgattaatgataatagataattttgcttgttaaaaaaaaaatgtaataatagatg 51364528  T
Q  763 aaataatatggaaattgcttttctcacatcagttatttcctaaacacacatggacatgattgttttatcctcaacagtagtttaactat------catat 856  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      ||| |    
T  51364527 aaataatatgaaaattgcttttctcacattagttatttcctaaacacacatggacatgattgttttatcctcaacggtagtttaactatcattcacatct 51364428  T
Q  857 gtgaatacagatagtgcattctttcatgcatgtcacacaatccattttttaaatacaagagtgagat 923  Q
    |||||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  51364427 gtgaatgcagacagtgcattctttcatgcatgtcacacaatcca-ttttaaaatacaagagtgagat 51364362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 51360779 - 51360941
Alignment:
Q  8 caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51360779 caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa 51360878  T
Q  108 ggaattgtgatgaacatatgtagtttacccaccaaagatgaaatgagtagctctatatcctcc 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51360879 ggaattgtgatgaacatatatagtttacccaccaaagatgaaatgagtagctctatatcctcc 51360941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 952 - 1013
Target Start/End: Complemental strand, 51364371 - 51364310
Alignment:
Q  952 agagtgagatattttgtttcttttgttaacattctcatattctatttgcatcacctcctaaa 1013  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  51364371 agagtgagatattttgtttcttttgttaacattttcatattctatttgcatcacctcttaaa 51364310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 581 - 662
Target Start/End: Complemental strand, 32577034 - 32576949
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||| |||| ||||||||    
T  32577034 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcagcctgttcttgggc 32576949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 774 - 821
Target Start/End: Complemental strand, 1790737 - 1790690
Alignment:
Q  774 aaattgcttttctcacatcagttatttcctaaacacacatggacatga 821  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  1790737 aaattgcttttcacacatcagttatttcctaaacacacatggaaatga 1790690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 662
Target Start/End: Original strand, 49951514 - 49951599
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  49951514 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 49951599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 596 - 646
Target Start/End: Original strand, 2065073 - 2065123
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctaggg 646  Q
    ||||||||||||| |||||||| || || ||||||||||||||||||||||    
T  2065073 tgaagtttgttaggagacaaacgaacatggttgctcatactttagctaggg 2065123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 596 - 658
Target Start/End: Complemental strand, 29655633 - 29655571
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctctt 658  Q
    ||||||||||||| |||||| | || || ||||||||||||||||||||||| ||||| ||||    
T  29655633 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcgacctgttctt 29655571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 647
Target Start/End: Complemental strand, 37245838 - 37245768
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  37245838 ttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagctagggc 37245768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 691 - 737
Target Start/End: Complemental strand, 10575319 - 10575273
Alignment:
Q  691 ttgtattgaacattgattaattaatgataataggtaattttactttg 737  Q
    ||||||||||||||| ||||||||||||||||| ||| ||| |||||    
T  10575319 ttgtattgaacattggttaattaatgataatagttaactttgctttg 10575273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 662
Target Start/End: Complemental strand, 18442114 - 18442048
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||  |||||||| || || |||||||||| ||||||||||||  |||| ||||||||    
T  18442114 tgaagtttgttatgagacaaacgaaaatggttgctcatattttagctagggcggcctgttcttgggc 18442048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 691 - 737
Target Start/End: Complemental strand, 24989804 - 24989758
Alignment:
Q  691 ttgtattgaacattgattaattaatgataataggtaattttactttg 737  Q
    |||||||||||||||||| |||||||||||||| ||| |||| ||||    
T  24989804 ttgtattgaacattgattgattaatgataatagttaactttattttg 24989758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 53870213 - 53870251
Alignment:
Q  362 gtttcatgtccttctaatttgtggaatgacaaggtggat 400  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  53870213 gtttcatgcccttctaatttgtggagtgacaaggtggat 53870251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 639
Target Start/End: Complemental strand, 26422588 - 26422526
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatacttta 639  Q
    |||||||||||||||    ||||||||||||| ||||| ||||| || |||||||||||||||    
T  26422588 ttacattccaacttcgaggtgaagtttgttaggagacagacaaacatggttgctcatacttta 26422526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 662
Target Start/End: Original strand, 28426404 - 28426469
Alignment:
Q  597 gaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||| |||||| | || || ||||||||||||||||||| ||   |||||||||||||    
T  28426404 gaagtttgttaggagacaagcgaacatggttgctcatactttagctaaggtggcctgctcttgggc 28426469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 662
Target Start/End: Complemental strand, 49119366 - 49119301
Alignment:
Q  597 gaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||| |||||| | || || ||||||||||||||||||| ||   |||||||||||||    
T  49119366 gaagtttgttaggagacaagcgaacatggttgctcatactttagctaaggtggcctgctcttgggc 49119301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 11870484 - 11870550
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||| |||||| | || || ||||||||||||||||||||||||||||| ||||||||    
T  11870484 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcaacctgttcttgggc 11870550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 581 - 662
Target Start/End: Complemental strand, 478042 - 477957
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||||||    ||||||||||||| |||||| | || || ||||||||||| |||||||||||  |||| ||||||||    
T  478042 ttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagggcgtcctgttcttgggc 477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 646
Target Start/End: Complemental strand, 3606706 - 3606656
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctaggg 646  Q
    ||||||||||||| |||||| | ||||| |||| |||||||||||||||||    
T  3606706 tgaagtttgttaggagacaagcgaatatggttgttcatactttagctaggg 3606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 647
Target Start/End: Original strand, 13415224 - 13415294
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||| ||| |||||| | || || |||||||||||||||||||||||    
T  13415224 ttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatactttagctagggc 13415294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 581 - 662
Target Start/End: Complemental strand, 11731655 - 11731570
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||||||    ||||||||||||| || ||| | || || |||||||||||||||||||||||| |||||||||||||    
T  11731655 ttacattccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatactttagctagggcagcctgctcttgggc 11731570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 581 - 661
Target Start/End: Original strand, 28107340 - 28107424
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttggg 661  Q
    |||||||||||||||    || |||||||||| |||||| |||| || |||||||||||||||||||||||||| || |||||||    
T  28107340 ttacattccaacttcgagctgtagtttgttaggagacaaccaaacatggttgctcatactttagctagggcaacttgttcttggg 28107424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 653
Target Start/End: Complemental strand, 15053142 - 15053085
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctg 653  Q
    |||||||||||||||||||| |||| ||  ||||||||||||||||||||||| ||||    
T  15053142 tgaagtttgttagaagacaagcaaacatgattgctcatactttagctagggcagcctg 15053085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 691 - 736
Target Start/End: Complemental strand, 15605864 - 15605819
Alignment:
Q  691 ttgtattgaacattgattaattaatgataataggtaattttacttt 736  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  15605864 ttgtattgaacattggttaattaatgataatagttaattttgcttt 15605819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 20378 - 20444
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||| |||||| | |||||  || ||||||||||||||||||||||||| ||||||||    
T  20378 tgaagtttgttaggagacaagcgaatatgattactcatactttagctagggcaacctgttcttgggc 20444  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 2615703 - 2615769
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||| |||||||| || || ||||||||||||||| ||||||| ||||| ||||||||    
T  2615703 tgaagtttgttaggagacaaacgaacatggttgctcatactttaactagggcgacctgttcttgggc 2615769  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 581 - 661
Target Start/End: Original strand, 48227569 - 48227653
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttggg 661  Q
    |||||||||||||||    |||| |||||||| |||||| ||||||| ||| ||||||||||||||||||| || || |||||||    
T  48227569 ttacattccaacttcgaggtgaaatttgttaggagacaagcaaatatggttcctcatactttagctagggcgacttgttcttggg 48227653  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 581 - 662
Target Start/End: Original strand, 53497233 - 53497318
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||||||    |||||||| |||| |||||| | || || | |||||||||||||||||||||| |||| ||||||||    
T  53497233 ttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttagctagggcagcctgttcttgggc 53497318  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 581 - 660
Target Start/End: Complemental strand, 647156 - 647073
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgg 660  Q
    |||||||||||||||    |||| |||||||| |||||||| || || |||||||||||||||| ||||||  |||| ||||||    
T  647156 ttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatactttagttagggcggcctgttcttgg 647073  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 581 - 647
Target Start/End: Complemental strand, 29200941 - 29200871
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||||| || || |||||||||||||||||||||||    
T  29200941 ttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctagggc 29200871  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 24139231 - 24139297
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  24139231 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 24139297  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 44481307 - 44481373
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  44481307 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 44481373  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 647
Target Start/End: Original strand, 16732134 - 16732204
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  16732134 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 16732204  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 647
Target Start/End: Original strand, 17710268 - 17710338
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  17710268 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 17710338  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 691 - 736
Target Start/End: Original strand, 17877715 - 17877760
Alignment:
Q  691 ttgtattgaacattgattaattaatgataataggtaattttacttt 736  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  17877715 ttgtattgaacattgattaattaatgataatagttaactttgcttt 17877760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 647
Target Start/End: Original strand, 24251640 - 24251710
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  24251640 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 24251710  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 647
Target Start/End: Complemental strand, 30493577 - 30493526
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    ||||||||||||| |||||| |||| || |||| ||||||||||||||||||    
T  30493577 tgaagtttgttaggagacaaccaaacatggttgttcatactttagctagggc 30493526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 643
Target Start/End: Complemental strand, 9328588 - 9328522
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagcta 643  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||    
T  9328588 ttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatactttagcta 9328522  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 662
Target Start/End: Original strand, 20205156 - 20205241
Alignment:
Q  581 ttacattccaacttct----gaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||||||    |||||||||||| |||||| | || || |||||||||||||||||||||||| |||  ||||||||    
T  20205156 ttacattccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcagcctattcttgggc 20205241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 774 - 816
Target Start/End: Original strand, 42857321 - 42857363
Alignment:
Q  774 aaattgcttttctcacatcagttatttcctaaacacacatgga 816  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  42857321 aaattgcttttctcacatcaaatatttcctaaacacacatgga 42857363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 643
Target Start/End: Complemental strand, 22767259 - 22767193
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagcta 643  Q
    |||||||||||||||    ||||||||||||| |||||||| || || |||||||||||||||||||    
T  22767259 ttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagcta 22767193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 581 - 662
Target Start/End: Original strand, 25731009 - 25731094
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||||||    ||||||||||||| ||| || | || || |||||||||||||||||||||||  |||| ||||||||    
T  25731009 ttacattccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 25731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 662
Target Start/End: Complemental strand, 11375489 - 11375423
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||  |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  11375489 tgaagtttgttaagagacaagcgaacatagttgctcatactttagctagggcggcctgttcttgggc 11375423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 662
Target Start/End: Complemental strand, 15988716 - 15988650
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||| |||||| || | || ||||||||||||||||||| |||  |||||| ||||||    
T  15988716 tgaagtttgttaggagacaagcagacatggttgctcatactttagctaaggcggcctgctattgggc 15988650  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 4395378 - 4395444
Alignment:
Q  596 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  4395378 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 4395444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 624 - 662
Target Start/End: Original strand, 2885474 - 2885512
Alignment:
Q  624 tgttgctcatactttagctagggcaacctgctcttgggc 662  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  2885474 tgttgctcatactttagctagggcgacctgttcttgggc 2885512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 598 - 659
Target Start/End: Complemental strand, 4898585 - 4898524
Alignment:
Q  598 aagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttg 659  Q
    ||||||||||| |||||||| |||||  ||||||||||||||| |||| | ||||| |||||    
T  4898585 aagtttgttaggagacaaacgaatatgattgctcatactttagttaggccgacctgttcttg 4898524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 647
Target Start/End: Original strand, 5609540 - 5609610
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||| | || || ||||||||||| |||||||||||    
T  5609540 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggc 5609610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 598 - 643
Target Start/End: Original strand, 23163373 - 23163418
Alignment:
Q  598 aagtttgttagaagacaaacaaatattgttgctcatactttagcta 643  Q
    |||||||||||||||||| | || || |||||||||||||||||||    
T  23163373 aagtttgttagaagacaagcgaacatggttgctcatactttagcta 23163418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 647
Target Start/End: Complemental strand, 34695890 - 34695820
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  34695890 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 34695820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 581 - 647
Target Start/End: Complemental strand, 34718302 - 34718232
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 647  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  34718302 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 34718232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 643
Target Start/End: Original strand, 9710156 - 9710222
Alignment:
Q  581 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagcta 643  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||    
T  9710156 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagcta 9710222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 774 - 829
Target Start/End: Original strand, 96069 - 96124
Alignment:
Q  774 aaattgcttttctcacatcagttatttcctaaacacacatggacatgattgtttta 829  Q
    |||||||||||||||||||| |||||||||||| ||| ||| | |||| |||||||    
T  96069 aaattgcttttctcacatcaattatttcctaaaaacatatgaaaatgactgtttta 96124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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