View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-1-Insertion-3 (Length: 825)
Name: NF0063-1-Insertion-3
Description: NF0063-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-1-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 8 - 809
Target Start/End: Original strand, 2483850 - 2484638
Alignment:
| Q |
8 |
acaaattgattattgagtttcttcatgtgcagcaagtggcatatcttgtgtttgcaattttggtttcttcttaaaataggcaccgcttgcaacatttgga |
107 |
Q |
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| T |
2483850 |
acaacttgattattgagtttcttcatgtgcagcaagtggcatatcttgaatt-gcaattttggtttcttcttaaaataggcaccgcttgcaacatttgga |
2483948 |
T |
|
| Q |
108 |
ttgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgagagg |
207 |
Q |
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| T |
2483949 |
ttgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgagagg |
2484048 |
T |
|
| Q |
208 |
cggtttggtaataagaaaaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcgaatg |
307 |
Q |
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| T |
2484049 |
cggtttggtaataagaaaaaatattacgatccactcagaaaggcttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcgaatg |
2484148 |
T |
|
| Q |
308 |
caaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaattc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484149 |
caaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaattc |
2484248 |
T |
|
| Q |
408 |
ggtttggttcatttggtttggtatgttgacttctcactttgatagtctttctctctttggtttcttcctttctgtttgactgcgtatctcccctttatga |
507 |
Q |
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| T |
2484249 |
--------------ggtttggtatgttgacttctcactttgattgtctttctctctttggtttcttcctttctgtttgactgcacatctcccctttatga |
2484334 |
T |
|
| Q |
508 |
ttgcacttcacttccctctatttgattcgttctctcttttgatttgtttctttgtttaactagtttctccttcattagtttttctgattgattgtccctc |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||||| |||||||||||||| |
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| T |
2484335 |
ttgcacttcacttccctctatttgattcgttctctcttttgatttgtttgtttgtttaattggtttctccctcattagtttttctcattgattgtccctc |
2484434 |
T |
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| Q |
608 |
tctgttggtctcttcttcatacttttgaatgattgtatctctccctcttggtttcttcttctgattgagtggattgcttctcccctgttttgattcttct |
707 |
Q |
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| T |
2484435 |
tctgttggtctcttcttcattcttttgattgattgtatctctccctcttgatttcttcttctgattgattggattgcttct-ccctgttttgattcttct |
2484533 |
T |
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| Q |
708 |
aattgattgcttctctccctttttaattcc-tctaattgattccgtctcccct-gttgattgttctgattgatttcttctctctctttgga-tcctctat |
804 |
Q |
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||||||||| ||||| |||||||||||||| ||||||||||| | |||||| | ||||||| |||||||||||||||||||||||||| || || ||||| |
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| T |
2484534 |
aattgattgtttctccccctttttaattccttctaattgatttcttctcccttagttgattattctgattgatttcttctctctcttttgattcttctat |
2484633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 83 - 293
Target Start/End: Complemental strand, 17927621 - 17927413
Alignment:
| Q |
83 |
ataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatt |
182 |
Q |
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|||| |||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||| || |
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| T |
17927621 |
atagacaccacttgcaacatt-ggattgagaaaattgtcgtt--aaaaaaaaggagttggatcgagtatacaatttggaatttgctaccatagttgtgtt |
17927525 |
T |
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| Q |
183 |
tgaagttattggattaattgagaggcggtttggtaataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggt |
281 |
Q |
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||||||||||||||||||| |||||| | | ||||||||||| |||||| | |||||||||| | |||| ||||||| |||||| ||| ||||| | |
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| T |
17927524 |
tgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaattttat |
17927425 |
T |
|
| Q |
282 |
gataaattgtat |
293 |
Q |
| |
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|||||||||||| |
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| T |
17927424 |
gataaattgtat |
17927413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 730
Target Start/End: Original strand, 8574429 - 8574462
Alignment:
| Q |
697 |
ttgattcttctaattgattgcttctctccctttt |
730 |
Q |
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| T |
8574429 |
ttgattcttctaattgattgcttctctccctttt |
8574462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 730
Target Start/End: Complemental strand, 11828434 - 11828384
Alignment:
| Q |
679 |
gattgcttctcccctgttttgattcttctaattgattgcttctctccctttt |
730 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
11828434 |
gattgcttctccccc-ttttgattcttttaattgattgcttctttccctttt |
11828384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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