View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-1-Insertion-4 (Length: 717)
Name: NF0063-1-Insertion-4
Description: NF0063-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-1-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 8 - 717
Target Start/End: Original strand, 51360779 - 51361488
Alignment:
| Q |
8 |
caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa |
107 |
Q |
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| T |
51360779 |
caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa |
51360878 |
T |
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| Q |
108 |
ggaattgtgatgaacatatgtagtttacccaccaaagatgaaatgagtagctctatatcctccttgtttcggtttacttactgcttggtactcaacatct |
207 |
Q |
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| T |
51360879 |
ggaattgtgatgaacatatatagtttacccaccaaagatgaaatgagtagctctatatcctccttgtttcggtttacttactgcttggtactcaacatct |
51360978 |
T |
|
| Q |
208 |
ttaacattagtctcatcttttgaatcctgtattttaaaatcaacacattttaagcatatagtttaaaaaatggtgagaaccatttttgtgagatatacta |
307 |
Q |
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| T |
51360979 |
ttaacattagtctcatcttttgaatcctgtattttaaaatcaacacattttaagcatatagtttaaaaaatggtgagaaccatttttgtgagatatacta |
51361078 |
T |
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| Q |
308 |
ttggagaatgattcaataacttcaacaaaaagaagttgaagacgaatatgatgatggttgcataaatcattctgtgtagacacactaaattttatgttcg |
407 |
Q |
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| T |
51361079 |
ttggagaatgattcaataacttcaacaaaaagaagttgaagacgaatatgatgatggttgcataaataattttgtgtagacacgctaaattttatgttcg |
51361178 |
T |
|
| Q |
408 |
attcactcaatcagtttatacaaactttatgcgatagaaataaccgtgaatgccttcatgaatatgctttgaaatccttgaagtgaattgcataagtttc |
507 |
Q |
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| T |
51361179 |
attcactcaatcagtttatacaaactttatgcgatagatataaccgtgaatgccttcatgaatatgctttgaaatccttgaagtgaattgcataagtttc |
51361278 |
T |
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| Q |
508 |
tctccattcttcctttgtactagagaaaagaagatattagtttgacataatatctctcttggctaagattcaaaatgtggtttgccttatcatggggact |
607 |
Q |
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| T |
51361279 |
tctccattcttcctttgtactagagaaaagaagatattaatttgacataatatctctcttggctaagattcaaaatgtggtttgccttatcatggggact |
51361378 |
T |
|
| Q |
608 |
aggtcatttcattaaacatgttaagaatctcacttaactaaagttctaattaagatggtaccaaagcttatcctcgacctatttggccatctactttcag |
707 |
Q |
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| T |
51361379 |
aggtcatttcattaaacatgttaagaatctcacttaactaaagttctaattaagatggtaccaaagcttatcctcgacctatttggccatctactatcag |
51361478 |
T |
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| Q |
708 |
attattgcta |
717 |
Q |
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|||||||||| |
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| T |
51361479 |
attattgcta |
51361488 |
T |
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