View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063-1-Insertion-6 (Length: 480)
Name: NF0063-1-Insertion-6
Description: NF0063-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-1-Insertion-6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 25 - 461
Target Start/End: Complemental strand, 51363939 - 51363494
Alignment:
| Q |
25 |
ccacaattcaattgcatgagtcgaaagttgaaaaccttatcaaattgtgattacaagccataaactaccattgatcaccttttattacaagatatcactc |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
51363939 |
ccacaattcaatttcatgagtcgaaagttgaaaaccttatcaaattgtgattacaagccataaactaccattgaccaccttctattacaagatatcactc |
51363840 |
T |
|
| Q |
125 |
attactcatttgttttccaaaagtaaatgacattgaaagtttactgtagtctataatcccttctcccttgtgaaactcgtttgacgttctctcttgtgaa |
224 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51363839 |
attactcatttgttttccaagagtaaatgacattgaaagttttctgtagtctgtaatcccttctcccttgtgaaactcgtttgacgttctctcttgtgaa |
51363740 |
T |
|
| Q |
225 |
t---------atttccactagtgtccaaattcaatggatgtggtgcaacaaatgttagtgtacattgcatatcctttaaatccttac-nnnnnnngtatc |
314 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
51363739 |
tggctattccatttacactagtgtccaaattcaatggatgtggtgcaacaaatgttagtgtacattgcacatcctttaaatccttacaaaaaaaagtatc |
51363640 |
T |
|
| Q |
315 |
aagcattaaaataatgtagaattagtgtggtggcaattacatcgaccatggctaatttgcaaatgataatcaggttaatttttgacggaatggatatata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51363639 |
aagcattaaaataatgtagaattagtgtggtggcaattacatcgaccatggctaatttgcaaatgataatcaggttaatttttgacggaatggatatata |
51363540 |
T |
|
| Q |
415 |
ttcattgaaatttttgaagggaagacaaaaattgaaagaaatgtttg |
461 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51363539 |
ttcattgaaa-gaaagaagggaagacaaaaattgaaagaaatgtttg |
51363494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 17146799 - 17146724
Alignment:
| Q |
63 |
atcaaattgtgattacaagccataaactaccattgatcaccttttattacaagatatcactcattactcatttgtt |
138 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17146799 |
atcaaattgtcattacaagccataaactaccattgaccaccttttattacaagatatcactcattactcgtttgtt |
17146724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University