View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063-1-Insertion-6 (Length: 480)
Name: NF0063-1-Insertion-6
Description: NF0063-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063-1-Insertion-6
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 25 - 461
Target Start/End: Complemental strand, 51363939 - 51363494
Alignment:
Q
25
ccacaattcaattgcatgagtcgaaagttgaaaaccttatcaaattgtgattacaagccataaactaccattgatcaccttttattacaagatatcactc
124
Q
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
T
51363939
ccacaattcaatttcatgagtcgaaagttgaaaaccttatcaaattgtgattacaagccataaactaccattgaccaccttctattacaagatatcactc
51363840
T
Q
125
attactcatttgttttccaaaagtaaatgacattgaaagtttactgtagtctataatcccttctcccttgtgaaactcgtttgacgttctctcttgtgaa
224
Q
|||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
T
51363839
attactcatttgttttccaagagtaaatgacattgaaagttttctgtagtctgtaatcccttctcccttgtgaaactcgtttgacgttctctcttgtgaa
51363740
T
Q
225
t---------atttccactagtgtccaaattcaatggatgtggtgcaacaaatgttagtgtacattgcatatcctttaaatccttac-nnnnnnngtatc
314
Q
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
T
51363739
tggctattccatttacactagtgtccaaattcaatggatgtggtgcaacaaatgttagtgtacattgcacatcctttaaatccttacaaaaaaaagtatc
51363640
T
Q
315
aagcattaaaataatgtagaattagtgtggtggcaattacatcgaccatggctaatttgcaaatgataatcaggttaatttttgacggaatggatatata
414
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
51363639
aagcattaaaataatgtagaattagtgtggtggcaattacatcgaccatggctaatttgcaaatgataatcaggttaatttttgacggaatggatatata
51363540
T
Q
415
ttcattgaaatttttgaagggaagacaaaaattgaaagaaatgtttg
461
Q
|||||||||| ||||||||||||||||||||||||||||||||
T
51363539
ttcattgaaa-gaaagaagggaagacaaaaattgaaagaaatgtttg
51363494
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 17146799 - 17146724
Alignment:
Q
63
atcaaattgtgattacaagccataaactaccattgatcaccttttattacaagatatcactcattactcatttgtt
138
Q
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
T
17146799
atcaaattgtcattacaagccataaactaccattgaccaccttttattacaagatatcactcattactcgtttgtt
17146724
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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