View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-1-Insertion-7 (Length: 380)
Name: NF0063-1-Insertion-7
Description: NF0063-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-1-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 13041135 - 13041507
Alignment:
| Q |
8 |
gaagtgatgaaattgaaatcagaattttgaaccaactttgctaataatacacaaataatcttctccaaaataccatagctatttgcatatgtataaaatt |
107 |
Q |
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| T |
13041135 |
gaagtgatgaaattgaaatcagaattttgaaccaactttgctaataatacacaaataatcttctccaaaataccatagctatttgcatatgtataaaatt |
13041234 |
T |
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| Q |
108 |
tctcacattcacaacacttgagacttactattatttcattccatttccaatcatagattccatcaagaaatgtttgtgtttgttgcaagagattgttgct |
207 |
Q |
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| T |
13041235 |
tctcacattcacaacacttgagacttactattatttcattccatttccaatcatagattccatcaagaaatgtttgtgtttgttgcaagagattgttgct |
13041334 |
T |
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| Q |
208 |
acaaacttcttcactcatttcaagataatgagcacaaaaatgaaggataagaacattggatgcattaatggtgattttgccattgttgtaacaaaatttc |
307 |
Q |
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| T |
13041335 |
acaaacttcttcactcatttcaagataatgagcacaacaatgaaggataagaacattggatgcattaatggtgattttgccattgttgtaacaaaatttc |
13041434 |
T |
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| Q |
308 |
aaagctaactcaaatccatatgatcctccaggaaaatcattgatatgaaatattctcctttcatcatttaaca |
380 |
Q |
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| T |
13041435 |
aaagctaactcaaatccatatgatcctccaggaaaatcattgatatgaaatattctcctttcatcatttaaca |
13041507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 28225389 - 28225282
Alignment:
| Q |
128 |
agacttactattatttcattccatttccaatcatagattccatcaagaaatgtttgtgtttgttgcaagagattgttgctacaaacttcttcactcattt |
227 |
Q |
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|||||||| | ||| |||||||||||||| | || |||||| | |||||| |||| |||||||||||| ||||| ||| | | ||||| ||| ||||| |
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| T |
28225389 |
agacttacaagtatgtcattccatttccagtaatggattcccttaagaaaagtttctgtttgttgcaaaagattattgttgaagacttcctcagtcattc |
28225290 |
T |
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| Q |
228 |
caagataa |
235 |
Q |
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| T |
28225289 |
caagataa |
28225282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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