View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063-1-Insertion-8 (Length: 330)
Name: NF0063-1-Insertion-8
Description: NF0063-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-1-Insertion-8 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 36039179 - 36039501
Alignment:
| Q |
8 |
ccatcctacactcaattatgagttttcggttgtttatgttaccctctttttccatcaaccactataaataaacttcaatctcgtttcaccccatgtgtct |
107 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
36039179 |
ccatcctacactcaattacgagttttcggttgtttatgttaccctctttttccatcaaccactataaataaactccaatctcgtttcaccccatatgtct |
36039278 |
T |
|
| Q |
108 |
tcttaggatatccttcaaatcatcgtgggtacaaatgctatgactaatccttnnnnnnnntcattgtttgttgccatgtcatatttgagaatcagaattt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36039279 |
tcttaggatatccttcaaatcatcgtgggtacaaatgccatgactaatccttaaaaaaaatcattgtttgttgccatgtcatatttgagaatcagaattt |
36039378 |
T |
|
| Q |
208 |
cctttttcaaagttgcacactctcaatccaagcaattatcaatttcttgatgatgaagtgtcaccttacataaaccaccttatcacacaaactagcccag |
307 |
Q |
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| T |
36039379 |
ccttttccaaagttgcacactctcaatccaaccaattatcaatttcttgatgatgaagtgtcaccttacataaaccactttatcacacaaactagcccag |
36039478 |
T |
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| Q |
308 |
gtcccaggacaccaaacatcact |
330 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
36039479 |
gtcccaggacaccaaacatcact |
36039501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 44354309 - 44354262
Alignment:
| Q |
96 |
ccccatgtgtcttcttaggatatccttcaaatcatcgtgggtacaaat |
143 |
Q |
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| T |
44354309 |
ccccatgtgtctttttaggatatccatcaaatcaccgtggatacaaat |
44354262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 1666502 - 1666825
Alignment:
| Q |
8 |
ccatcctacactcaattatgagttttcggttgtttatgttaccctctttttccatcaaccactataaataaacttcaatctcgtttcaccccatgtgtct |
107 |
Q |
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|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
1666502 |
ccatcctacactcatttacgagtttttggttgtttatgttaccctctttttccatcaaccactataaataaactccaatctcgttccaccccatgtgtct |
1666601 |
T |
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| Q |
108 |
tcttaggatatccttcaaatcatcgtgggtacaaatgctatgactaatccttnnnnnnnntcattgtttgttgccatgtcatatttga-gaatcagaatt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1666602 |
tcttaggatatccttcaaatcatcgtgggtacaaatgctatgacttatccctaaataaaatcattgtttgtcgccatgtcatatttgatgaatcagaatt |
1666701 |
T |
|
| Q |
207 |
tcctttttcaaagttgcacactctcaatccaagcaattatcaatttcttgatgatgaagtgtcaccttacataaaccaccttatcacacaaactagccca |
306 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1666702 |
tcctttttcaaagatgcacactctcaatccaaccaattatcaatttcttgatgatgaagtgtcaccttacataaaccactttatcacacaaactagccca |
1666801 |
T |
|
| Q |
307 |
ggtcccaggacaccaaacatcact |
330 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
1666802 |
agtccaaggacaccaaacatcact |
1666825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 1851903 - 1852015
Alignment:
| Q |
38 |
tgtttatgttaccctctttttccatcaaccactataaataaacttcaatctcgtttcaccccatgtgtcttcttaggatatccttcaaatcatcgtgggt |
137 |
Q |
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||||||||||| ||| | ||||| || ||||| ||||| ||||||||| | |||| ||||| ||||| || || ||||| || || ||||||||||| | |
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| T |
1851903 |
tgtttatgttatcctttatttccctctaccaccataaacaaacttcaagcccgttctaccccgtgtgtttttttgggatacccatctaatcatcgtggtt |
1852002 |
T |
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| Q |
138 |
acaaatgctatga |
150 |
Q |
| |
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||||||| ||||| |
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| T |
1852003 |
acaaatgttatga |
1852015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 36648340 - 36648452
Alignment:
| Q |
38 |
tgtttatgttaccctctttttccatcaaccactataaataaacttcaatctcgtttcaccccatgtgtcttcttaggatatccttcaaatcatcgtgggt |
137 |
Q |
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||||||||||| ||| | ||||| || ||||| ||||| ||||||||| | |||| ||||| ||||| || || ||||| || || ||||||||||| | |
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| T |
36648340 |
tgtttatgttatcctttatttccctctaccaccataaacaaacttcaagcccgttctaccccgtgtgtttttttgggatacccatctaatcatcgtggtt |
36648439 |
T |
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| Q |
138 |
acaaatgctatga |
150 |
Q |
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| T |
36648440 |
acaaatgttatga |
36648452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 16090739 - 16091062
Alignment:
| Q |
8 |
ccatcctacactcaattatgagttttcggttgtttatgttaccctctttttccatcaaccactataaataaacttcaatctcgtttcaccccatgtgtct |
107 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
16090739 |
ccatcctacactcatttacgagttttcggttgtttatgttaccccctttttccatcaaccactataaataaactccaatctcgttccaccccatgtgtct |
16090838 |
T |
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| Q |
108 |
tcttaggatatccttcaaatcatcgtgggtacaaatgctatgactaatccttnnnnnnnntcattgtttgttgccatgtcatatttga-gaatcagaatt |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
16090839 |
tcttagggtatccttcaaatcatcgtgggtacaaatgctatgacttatccttaaataaaatcattgtttgtcgccatgtcatatttgatgaatcagaatt |
16090938 |
T |
|
| Q |
207 |
tcctttttcaaagttgcacactctcaatccaagcaattatcaatttcttgatgatgaagtgtcaccttacataaaccaccttatcacacaaactagccca |
306 |
Q |
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||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16090939 |
tcctttttcaaagctgcacactctcaattcaaccaattatcaatttcttgatgatggagtgtcaccttacataaaccattttatcacacaaactagccca |
16091038 |
T |
|
| Q |
307 |
ggtcccaggacaccaaacatcact |
330 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
16091039 |
ggtccaaggacaccaaacatcact |
16091062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 293
Target Start/End: Complemental strand, 7326330 - 7326071
Alignment:
| Q |
38 |
tgtttatgttaccctctttttccatcaaccactataaataaacttcaatctcgtttcaccccatgtgtcttcttaggatatccttcaaatcatcgtgggt |
137 |
Q |
| |
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|||||||||||||| |||||||||||| | |||||||| ||||| || |||||| ||| |||||||| || |||||||||||||| |||||||| || | |
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| T |
7326330 |
tgtttatgttacccactttttccatcacctactataaacaaactcgaacctcgttccacaccatgtgtttttttaggatatccttccaatcatcgcggat |
7326231 |
T |
|
| Q |
138 |
acaaatgctatgactaatccttnnnnnnnntcattgtttgttgccatgtcatatttga-gaatcagaatttcctttttcaaagttgcacactctcaatcc |
236 |
Q |
| |
|
||||||| ||||| | ||| ||||| |||| ||||||| |||||| | ||||||||||| || || || ||| ||||||||| |||| | |
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| T |
7326230 |
acaaatgttatgatttatcacaaaataaaatcattctttgccgccatgtgatatttaatgaatcagaattccccttctctaagctgcacactcccaatac |
7326131 |
T |
|
| Q |
237 |
aagcaattatcaatttcttgatgatgaagtgtcaccttac---ataaaccaccttatcac |
293 |
Q |
| |
|
| | |||||||||||||||| ||||| | || |||||| ||||||||||||||||| |
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| T |
7326130 |
caccggttatcaatttcttgataatgaattatccccttacattataaaccaccttatcac |
7326071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 28558616 - 28558661
Alignment:
| Q |
38 |
tgtttatgttaccctctttttccatcaaccactataaataaacttc |
83 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
28558616 |
tgtttatgttaccctctttttccatcacctactataaacaaacttc |
28558661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 7083002 - 7083114
Alignment:
| Q |
38 |
tgtttatgttaccctctttttccatcaaccactataaataaacttcaatctcgtttcaccccatgtgtcttcttaggatatccttcaaatcatcgtgggt |
137 |
Q |
| |
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||||||||||| ||| | ||||| || ||||| ||||| ||||||||| | |||| ||||| ||||| || || ||||| ||||| ||||||||| | | |
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|
| T |
7083002 |
tgtttatgttatcctttatttccctctaccaccataaacaaacttcaagcccgttctaccccgtgtgtttttttgggatacccttctaatcatcgtagtt |
7083101 |
T |
|
| Q |
138 |
acaaatgctatga |
150 |
Q |
| |
|
||||||| ||||| |
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|
| T |
7083102 |
acaaatgttatga |
7083114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 30463190 - 30463150
Alignment:
| Q |
95 |
accccatgtgtcttcttaggatatccttcaaatcatcgtgg |
135 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||| |
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| T |
30463190 |
accccatgtgtcttcttatgatatccatcaaatcattgtgg |
30463150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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