View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-2-Insertion-1 (Length: 1026)
Name: NF0063-2-Insertion-1
Description: NF0063-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-2-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 1000; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1000; E-Value: 0
Query Start/End: Original strand, 8 - 1026
Target Start/End: Original strand, 1113888 - 1114907
Alignment:
| Q |
8 |
taacattcattcacaatctccaaattctgagaccatgcggtaacccattcattgttatgtgatagaaatttcaatgttgaatcattttgaagaagtttga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1113888 |
taacattcattcacaatctccaaattctgagaccatgcggtaacccattcattgttatgtgatagaaatttcaatgttgaatcattttgaagaagtttga |
1113987 |
T |
|
| Q |
108 |
actgtgaacattctgtggaattgtgcacacaatcccc-caaacaaactgaaactcagtaagtaaatcattcattcatcagtatttcattaccaatgtatc |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1113988 |
actgtgaacattctgtggaattgtgcacacaatccccccaaacaaactgaaactcagtaagtaaatcattcattcatcattatttcattaccaatgtatc |
1114087 |
T |
|
| Q |
207 |
attttctcattgctagattcactcatactcatagaacccttcacagacacaatactttttctcttttctctgttgtttgcaacacagatcaacataaagg |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1114088 |
attttctcattgctagattcactcatactcatagaacccttcacagacacaatactttttctcttttctctgttgtttgcaacacagatcaacataaagg |
1114187 |
T |
|
| Q |
307 |
tggcacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaaccctaatggc |
406 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1114188 |
tgacacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaaccctaatggc |
1114287 |
T |
|
| Q |
407 |
ccaaatgctgttattcaacttttcagaagctatggtttctctgattctcagttatcaagccttgttaagaaacacccttttgtacttttatcaaaatctg |
506 |
Q |
| |
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| T |
1114288 |
ccaaatgctgttattcaacttttcagaagctatggtttctctgattctcagttatcaagccttgttaagaaacacccttttgtacttttatcaaaatctg |
1114387 |
T |
|
| Q |
507 |
ataagacacttttgccaaagctcaagtttttgcaatccattggggctgcaaccattgatttccccaaaatcttgattggtgacaagtttttgacagcaag |
606 |
Q |
| |
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| T |
1114388 |
ataagacacttttgccaaagctcaagtttttgcaatccattggggcttcaaccattgatttccccaaaatcttgattggtgacaagtttttgacagcaag |
1114487 |
T |
|
| Q |
607 |
cttagagaaaacaataatacctcgttacaagattcttaaaagcctagtttgcgatgataaaaaggtagttttagctttgaggcgtggatcatggaacttt |
706 |
Q |
| |
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| T |
1114488 |
cttagagaaaacaataatacctcgttacaagattcttaaaagcctagtttgcgatgataaaaaggtagttttagctttgaggcgtggatcatggaacttt |
1114587 |
T |
|
| Q |
707 |
tataatgattccatggttaatgattctgttccgaacattgaggttttgaggaagcttggtgtacctcaaagttctatttccagtttggtatccaattttc |
806 |
Q |
| |
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| T |
1114588 |
tataatgattccatggttaatgattctgttccgaacattgaggttttgaggaagcttggtgtacctcaaagttctatttccagtttggtatccaattttc |
1114687 |
T |
|
| Q |
807 |
cttgtgtagcattcaccaagcattctagatttgttgaggctgttaattcagtcaaagaaatggggtttgatccttcgaagttgtattttgttttggcgat |
906 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1114688 |
cttgtgtagcattcaccaagcattctagatttgttgaggctgttaattcagtcaaagaaatggggtttgatccttcgaagttgtattttgttttggcgat |
1114787 |
T |
|
| Q |
907 |
tcgagtgattgtaagtatggacaaagaaatttgggaatcaaaatttaagattttcgagaagtggggctggtcaagagatatttgtcgtttcgctttccta |
1006 |
Q |
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| T |
1114788 |
tcgagtgattgtaagtatggacaaagaaatttgggaatcaaaatttaagattttcgagaagtggggctggtcaagagatatttgtcgtttcgctttccta |
1114887 |
T |
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| Q |
1007 |
aagtatcctgagtatgtgat |
1026 |
Q |
| |
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|||||||||||||||||||| |
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| T |
1114888 |
aagtatcctgagtatgtgat |
1114907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 299 - 1004
Target Start/End: Complemental strand, 17377622 - 17376914
Alignment:
| Q |
299 |
cataaaggtggcacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaacc |
398 |
Q |
| |
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|||||||||| |||||||||| ||| || || | || ||||||| |||||||||||||| |||||||||||| | || |||||| ||| || ||||| |
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| T |
17377622 |
cataaaggtgacacctttacagtgtcaaaccttgttaattcatgtgagttgtcccctgaaacagcccttaaactcttaaacaggttgaaacccaaaaacc |
17377523 |
T |
|
| Q |
399 |
ctaatggcccaaatgctgttattcaacttttcagaagctatggtttctctgattctcagttatcaagccttgttaagaaacacccttttgtacttttat- |
497 |
Q |
| |
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|||||| |||||||||||||||||||||| | || | ||||||||| |||||||| || |||| | | ||| ||||||||||||||||||||||||| |
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| T |
17377522 |
ctaatgccccaaatgctgttattcaacttctaaggaactatggtttttctgattcccaattatgtatctatgtaaagaaacacccttttgtacttttatg |
17377423 |
T |
|
| Q |
498 |
caaaatctgataagacacttttgccaaagctcaagtttttgcaatccattggggctgcaaccattgatttccccaaaatcttgattggtgaca---agtt |
594 |
Q |
| |
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||||||| || ||||| |||||||| || ||| | ||||||| |||||||||| | ||| || |||| |||||||||| | ||| | ||| | || |
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| T |
17377422 |
caaaatc-gaaaagacccttttgcctaaactcgattttttgcgttccattggggtttcaaacactgatctccccaaaatactaattaggaacacttactt |
17377324 |
T |
|
| Q |
595 |
tttgacagcaagcttagagaaaacaataatacctcgttacaagattcttaaaagcctagtttgcgatgataaaaaggtagttttagctttgaggcgtgga |
694 |
Q |
| |
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|||||| ||||||| |||||| | || || ||||| || || | ||| ||| | ||| || |||||||| ||||||||| | |||||| ||||||| |
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| T |
17377323 |
tttgacttcaagcttggagaaatccattatccctcgctatgaggtcattagaagtttcgttcgcaatgataaagaggtagtttcaactttgaagcgtgga |
17377224 |
T |
|
| Q |
695 |
tcatggaacttttataatgattccatggttaatgattctgttccgaacattgaggttttgaggaagcttggtgtacctcaaagttctatttccagtttgg |
794 |
Q |
| |
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||||| | | |||| || || || |||||| | |||| ||| |||||||||||||||||||||||||| | |||| |||| ||||| ||| |
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| T |
17377223 |
acatggggcacacacaatgcttggattgtaaatgatgcagttcagaatattgaggttttgaggaagcttggtgtgcttcaaggttccatttctctactgg |
17377124 |
T |
|
| Q |
795 |
tatccaattttccttgtgtagcattcaccaagcattctagatttgttgaggctgttaattcagtcaaagaaatggggtttgatccttcgaagttgtattt |
894 |
Q |
| |
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||||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
17377123 |
tatccaattttcccaatgtagcattcgccaggcattctagatttgttaaggctgttaattcagtcaaagaaatggggtttgatcctttgatgtcttattt |
17377024 |
T |
|
| Q |
895 |
tgttttggcgattcgagtgattgtaagtatggacaaagaaatttgggaatcaaaatttaagattttcgagaagtggggctggtcaagagatatttgtcgt |
994 |
Q |
| |
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||||||||| ||| ||| |||| || ||| ||||||| | ||||||||||||| | |||||||| |||| |||||| ||||| |||||||| |||| | |
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| T |
17377023 |
tgttttggcagttcaagtaattgcaaagatgaacaaagagaattgggaatcaaaaatcaagatttttgagaggtggggttggtcgagagatatgtgtctt |
17376924 |
T |
|
| Q |
995 |
ttcgctttcc |
1004 |
Q |
| |
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|| ||||||| |
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| T |
17376923 |
ttagctttcc |
17376914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 891 - 992
Target Start/End: Complemental strand, 17374273 - 17374173
Alignment:
| Q |
891 |
attttgttttggcgattcgagtgattgtaagtatggacaaagaaatttgggaatcaaaatttaagattttcgagaagtggggctggtcaagagatatttg |
990 |
Q |
| |
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||||||||||||| ||| ||| |||| |||| | |||||||||||| | ||||||||||||| |||||| |||||| |||||||||| ||| |||| || |
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| T |
17374273 |
attttgttttggcacttcaagtaattgcaagtgtagacaaagaaatt-gtgaatcaaaatttaggatttttgagaagcggggctggtcgagacatatctg |
17374175 |
T |
|
| Q |
991 |
tc |
992 |
Q |
| |
|
|| |
|
|
| T |
17374174 |
tc |
17374173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 791 - 863
Target Start/End: Complemental strand, 11404990 - 11404920
Alignment:
| Q |
791 |
ttggtatccaattttccttgtgtagcattcaccaagcattctagatttgttgaggctgttaattcagtcaaag |
863 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
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|
| T |
11404990 |
ttggtaaccaattttccaagtgtagcattcaccaagcattc--catttgttgaggttgttaattcagtgaaag |
11404920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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