View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-2-Insertion-3 (Length: 873)
Name: NF0063-2-Insertion-3
Description: NF0063-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-2-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 378 - 873
Target Start/End: Original strand, 42562540 - 42563017
Alignment:
| Q |
378 |
caaggtaagaataatgattaggttattttcgattcatttttctttcattgcttgttagtaagtggtttcctttcctacaattctctatttaacattacgt |
477 |
Q |
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| T |
42562540 |
caaggtaagaataatgattaggttattttcgattcatttttctttcattgcttgttagtaagtgggttcctttcctacaattctctatttaacattacgt |
42562639 |
T |
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| Q |
478 |
tttcaaaacattattaaagaagtaaagtct----acctggatctgacatccttttctgatgaaatgtttgcacttgagaaatatcctgactcttaataca |
573 |
Q |
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| T |
42562640 |
tttcaaaacatgattaaagaagtaaagtctgtctacgtagatctgatatccttttctgatgaaatgtttgcacttgaaaaatatcctgactcttaacaca |
42562739 |
T |
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| Q |
574 |
attggaactccctagattgtcaggctaggtctgattaatcatgctaaggaatacacacacgcctaaattgtcactgtaataaaaaactctcaagattagg |
673 |
Q |
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| T |
42562740 |
attggaactccctagattgtcaggctaggtcagattaatcatgctaaggaatacacacacgcctaaattgtccctgtaat-aaaaactctcaagattagg |
42562838 |
T |
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| Q |
674 |
gccacgtaattatactaaatagggcatgtgtaccaaaagtgtcacaaatctataataattaattccctattaataaacatagaacaaccttagttaaaca |
773 |
Q |
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| T |
42562839 |
gccacgtaattatactaaatagggcatgtgtaccaaaagtgtcacaaatctataataattaatt-cctattaataaacatagaacaa------------- |
42562924 |
T |
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| Q |
774 |
gtcaggcgaatgttgtcaatgggtctaaatgccaagatgacctgtgttacatattcaattgaaggaaaattaaattggaacaattactatagtttagaac |
873 |
Q |
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| T |
42562925 |
-----gcgaatgttgtcaat-ggtctaaatg-caagatgacctgtgttacatattcaattgaaggaaaattaaattgaaacaattactatagtttagaac |
42563017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 22 - 352
Target Start/End: Original strand, 42562186 - 42562513
Alignment:
| Q |
22 |
agtcgattgcacgcgttaaactaactcactctatcagcaaccaagctagggtatgctagttttatatacgacaatctcaataatatcaatccttacatgt |
121 |
Q |
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| T |
42562186 |
agtcgattgcacgcgttaaactaactcactctatcagcaaccaagttagggtatgctagttttatatacgacaatctcaataatatcaatccttacatgt |
42562285 |
T |
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| Q |
122 |
ctgctttgtatctattttaaacatgtgttacttactttatcattaatttattcacta--acatcactataatgaaaaatgatcttgtttaattttgtttt |
219 |
Q |
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| T |
42562286 |
ctgctttgtatctattttaaacatgtgttacttattttatcattaatttattcactattacatcacta-----aaaaatgatcttgtttaattttgtttt |
42562380 |
T |
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| Q |
220 |
ttctaaatcacgttgcaatttacaagaattttatggccgtaaatcatgaatgatctgatagatagatattatgaaatttctacttgaaatatataaatta |
319 |
Q |
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| T |
42562381 |
ttctaaatcacgttgcaatttacaagaatttcatggccgtagatcatgaatgatctgatagatagatattatgaaatttctacttgaaatatataaatta |
42562480 |
T |
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| Q |
320 |
gggagatgcacttgacacaagttttgtttgcac |
352 |
Q |
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| T |
42562481 |
gggagatgcacttgacccaagttttgtttgcac |
42562513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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