View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063-2-Insertion-4 (Length: 856)

Name: NF0063-2-Insertion-4
Description: NF0063-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063-2-Insertion-4
NF0063-2-Insertion-4
[»] chr4 (14 HSPs)
chr4 (116-856)||(51364443-51365171)
chr4 (37-111)||(54159499-54159573)
chr4 (590-671)||(32576949-32577034)
chr4 (783-830)||(1790690-1790737)
chr4 (590-671)||(49951514-49951599)
chr4 (605-655)||(2065073-2065123)
chr4 (605-667)||(29655571-29655633)
chr4 (590-656)||(37245768-37245838)
chr4 (700-746)||(10575273-10575319)
chr4 (605-671)||(18442048-18442114)
chr4 (700-746)||(24989758-24989804)
chr4 (590-648)||(26422526-26422588)
chr4 (606-671)||(28426404-28426469)
chr4 (606-671)||(49119301-49119366)
[»] chr8 (4 HSPs)
chr8 (605-671)||(11870484-11870550)
chr8 (590-671)||(477957-478042)
chr8 (605-655)||(3606656-3606706)
chr8 (590-656)||(13415224-13415294)
[»] chr6 (4 HSPs)
chr6 (590-671)||(11731570-11731655)
chr6 (590-670)||(28107340-28107424)
chr6 (605-662)||(15053085-15053142)
chr6 (700-745)||(15605819-15605864)
[»] scaffold0198 (1 HSPs)
scaffold0198 (605-671)||(20378-20444)
[»] chr3 (4 HSPs)
chr3 (605-671)||(2615703-2615769)
chr3 (590-670)||(48227569-48227653)
chr3 (590-671)||(53497233-53497318)
chr3 (590-669)||(647073-647156)
[»] chr7 (9 HSPs)
chr7 (590-656)||(29200871-29200941)
chr7 (605-671)||(24139231-24139297)
chr7 (605-671)||(44481307-44481373)
chr7 (590-656)||(16732134-16732204)
chr7 (590-656)||(17710268-17710338)
chr7 (700-745)||(17877715-17877760)
chr7 (590-656)||(24251640-24251710)
chr7 (605-656)||(30493526-30493577)
chr7 (590-652)||(9328522-9328588)
[»] chr5 (7 HSPs)
chr5 (590-671)||(20205156-20205241)
chr5 (783-825)||(42857321-42857363)
chr5 (45-110)||(15016378-15016443)
chr5 (590-652)||(22767193-22767259)
chr5 (590-671)||(25731009-25731094)
chr5 (605-671)||(11375423-11375489)
chr5 (605-671)||(15988650-15988716)
[»] chr1 (5 HSPs)
chr1 (605-671)||(4395378-4395444)
chr1 (633-671)||(2885474-2885512)
chr1 (607-668)||(4898524-4898585)
chr1 (590-656)||(5609540-5609610)
chr1 (607-652)||(23163373-23163418)
[»] chr2 (3 HSPs)
chr2 (590-656)||(34695820-34695890)
chr2 (590-656)||(34718232-34718302)
chr2 (590-652)||(9710156-9710222)
[»] scaffold0024 (1 HSPs)
scaffold0024 (783-838)||(96069-96124)


Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 116 - 856
Target Start/End: Complemental strand, 51365171 - 51364443
Alignment:
Q  116 aaatcaacgaaagttgtaccataggctcgtaaatcaaactcttatgtttgtctcaggtatatccgttttcggtttgacttgttggttgttcataaagttt 215  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51365171 aaatcaacgaaagttgtaccataggcttgtaaatcaaactcttatgtttgtctcaggtatatccgttttcggtttgacttgttggttgttcataaagttt 51365072  T
Q  216 cttttggctttatttgatttttgtatatcttggttcatgtgttctacttatttggttgcatatttcattttgatattccatggtgttccctctcttgtaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51365071 cttttggctttatttgatttttgtatatcttggttcatgtgttctacttatttggttgcatatttcattttgatattccatggtgttctctctcttgtaa 51364972  T
Q  316 ccttgaagtggtgtgtgaccgttgttcatacttgtttttccattttgcatgtttagtttcacgtccttctaatttgtggaatgacaaggtggattgaagt 415  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51364971 tcttgaagtggtgtgtgaccgttgttcatacttgtttttccattttgcatgtttagtttcatgtccttctaatttgtggaatgacaaggtggattgaagt 51364872  T
Q  416 ggcgtgttccctttgtaatttatttttggatgtttaatgatttagtatcgaataatattgcagttggagcggcactggcgttcgttggggtgggagcttg 515  Q
    || |||||| ||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51364871 ggtgtgttctctttgtaatttatttttggatgtt-----------------ataatattgcagttggagcggcactggcgttcgttggggtgggagcttg 51364789  T
Q  516 taggattgcacggaagaa----taagtatatggttaagatacaaatgtttttccttaatacaaatgtatttgtgaagattacattccaacttctgaagtt 611  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51364788 taggattgcacggaagaataagtaagtatatggttaagatacaaatgtttttccttaatacaaatgtatttgtgaagattacattccaacttgtgaagtt 51364689  T
Q  612 tgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggcgtcaccgta-nnnnnnnnnnnnnnnnnngttgtattgaac 710  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||                   ||||||||||||    
T  51364688 tgttagaagacaaacgaatattgttgctcatactttagctagggcaacctgcccttgggcgtcaccgtatttttttatttttattgttgttgtattgaac 51364589  T
Q  711 attgattaattaatgataataggtaattttactttgttnnnnnnnnncgggataatggatgaaataatatggaaattgcttttctcacatcagttatttc 810  Q
    |||| || |||||||||||||| ||||||| |||  |           |  ||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  51364588 attggttgattaatgataatagataattttgcttgttaaaaaaaaaatgtaataatagatgaaataatatgaaaattgcttttctcacattagttatttc 51364489  T
Q  811 ctaaacacacatggacatgattgttttatcctcaacagtagtttaa 856  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  51364488 ctaaacacacatggacatgattgttttatcctcaacggtagtttaa 51364443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 54159573 - 54159499
Alignment:
Q  37 ttttatgtacagtgggcattcatgaccctgctagacccaacttttagtgtggagaatctgatttacataggttac 111  Q
    |||||||||||||||||| ||||||| ||  |||||||||||||||||||| |||||||| ||||||| ||||||    
T  54159573 ttttatgtacagtgggcactcatgacacttatagacccaacttttagtgtgaagaatctgctttacattggttac 54159499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 590 - 671
Target Start/End: Complemental strand, 32577034 - 32576949
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||| |||| ||||||||    
T  32577034 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcagcctgttcttgggc 32576949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 783 - 830
Target Start/End: Complemental strand, 1790737 - 1790690
Alignment:
Q  783 aaattgcttttctcacatcagttatttcctaaacacacatggacatga 830  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  1790737 aaattgcttttcacacatcagttatttcctaaacacacatggaaatga 1790690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 671
Target Start/End: Original strand, 49951514 - 49951599
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  49951514 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 49951599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 2065073 - 2065123
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctaggg 655  Q
    ||||||||||||| |||||||| || || ||||||||||||||||||||||    
T  2065073 tgaagtttgttaggagacaaacgaacatggttgctcatactttagctaggg 2065123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 667
Target Start/End: Complemental strand, 29655633 - 29655571
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctctt 667  Q
    ||||||||||||| |||||| | || || ||||||||||||||||||||||| ||||| ||||    
T  29655633 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcgacctgttctt 29655571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 656
Target Start/End: Complemental strand, 37245838 - 37245768
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  37245838 ttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagctagggc 37245768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 746
Target Start/End: Complemental strand, 10575319 - 10575273
Alignment:
Q  700 ttgtattgaacattgattaattaatgataataggtaattttactttg 746  Q
    ||||||||||||||| ||||||||||||||||| ||| ||| |||||    
T  10575319 ttgtattgaacattggttaattaatgataatagttaactttgctttg 10575273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 605 - 671
Target Start/End: Complemental strand, 18442114 - 18442048
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||  |||||||| || || |||||||||| ||||||||||||  |||| ||||||||    
T  18442114 tgaagtttgttatgagacaaacgaaaatggttgctcatattttagctagggcggcctgttcttgggc 18442048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 746
Target Start/End: Complemental strand, 24989804 - 24989758
Alignment:
Q  700 ttgtattgaacattgattaattaatgataataggtaattttactttg 746  Q
    |||||||||||||||||| |||||||||||||| ||| |||| ||||    
T  24989804 ttgtattgaacattgattgattaatgataatagttaactttattttg 24989758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 648
Target Start/End: Complemental strand, 26422588 - 26422526
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatacttta 648  Q
    |||||||||||||||    ||||||||||||| ||||| ||||| || |||||||||||||||    
T  26422588 ttacattccaacttcgaggtgaagtttgttaggagacagacaaacatggttgctcatacttta 26422526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 671
Target Start/End: Original strand, 28426404 - 28426469
Alignment:
Q  606 gaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||| |||||| | || || ||||||||||||||||||| ||   |||||||||||||    
T  28426404 gaagtttgttaggagacaagcgaacatggttgctcatactttagctaaggtggcctgctcttgggc 28426469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 671
Target Start/End: Complemental strand, 49119366 - 49119301
Alignment:
Q  606 gaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||| |||||| | || || ||||||||||||||||||| ||   |||||||||||||    
T  49119366 gaagtttgttaggagacaagcgaacatggttgctcatactttagctaaggtggcctgctcttgggc 49119301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 11870484 - 11870550
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||| |||||| | || || ||||||||||||||||||||||||||||| ||||||||    
T  11870484 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcaacctgttcttgggc 11870550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 671
Target Start/End: Complemental strand, 478042 - 477957
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||||||    ||||||||||||| |||||| | || || ||||||||||| |||||||||||  |||| ||||||||    
T  478042 ttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagggcgtcctgttcttgggc 477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 3606706 - 3606656
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctaggg 655  Q
    ||||||||||||| |||||| | ||||| |||| |||||||||||||||||    
T  3606706 tgaagtttgttaggagacaagcgaatatggttgttcatactttagctaggg 3606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 656
Target Start/End: Original strand, 13415224 - 13415294
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||| ||| |||||| | || || |||||||||||||||||||||||    
T  13415224 ttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatactttagctagggc 13415294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 590 - 671
Target Start/End: Complemental strand, 11731655 - 11731570
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||||||    ||||||||||||| || ||| | || || |||||||||||||||||||||||| |||||||||||||    
T  11731655 ttacattccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatactttagctagggcagcctgctcttgggc 11731570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 590 - 670
Target Start/End: Original strand, 28107340 - 28107424
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttggg 670  Q
    |||||||||||||||    || |||||||||| |||||| |||| || |||||||||||||||||||||||||| || |||||||    
T  28107340 ttacattccaacttcgagctgtagtttgttaggagacaaccaaacatggttgctcatactttagctagggcaacttgttcttggg 28107424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 662
Target Start/End: Complemental strand, 15053142 - 15053085
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctg 662  Q
    |||||||||||||||||||| |||| ||  ||||||||||||||||||||||| ||||    
T  15053142 tgaagtttgttagaagacaagcaaacatgattgctcatactttagctagggcagcctg 15053085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 745
Target Start/End: Complemental strand, 15605864 - 15605819
Alignment:
Q  700 ttgtattgaacattgattaattaatgataataggtaattttacttt 745  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  15605864 ttgtattgaacattggttaattaatgataatagttaattttgcttt 15605819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 20378 - 20444
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||| |||||| | |||||  || ||||||||||||||||||||||||| ||||||||    
T  20378 tgaagtttgttaggagacaagcgaatatgattactcatactttagctagggcaacctgttcttgggc 20444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 2615703 - 2615769
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||| |||||||| || || ||||||||||||||| ||||||| ||||| ||||||||    
T  2615703 tgaagtttgttaggagacaaacgaacatggttgctcatactttaactagggcgacctgttcttgggc 2615769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 590 - 670
Target Start/End: Original strand, 48227569 - 48227653
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttggg 670  Q
    |||||||||||||||    |||| |||||||| |||||| ||||||| ||| ||||||||||||||||||| || || |||||||    
T  48227569 ttacattccaacttcgaggtgaaatttgttaggagacaagcaaatatggttcctcatactttagctagggcgacttgttcttggg 48227653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 671
Target Start/End: Original strand, 53497233 - 53497318
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||||||    |||||||| |||| |||||| | || || | |||||||||||||||||||||| |||| ||||||||    
T  53497233 ttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttagctagggcagcctgttcttgggc 53497318  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 590 - 669
Target Start/End: Complemental strand, 647156 - 647073
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgg 669  Q
    |||||||||||||||    |||| |||||||| |||||||| || || |||||||||||||||| ||||||  |||| ||||||    
T  647156 ttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatactttagttagggcggcctgttcttgg 647073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 590 - 656
Target Start/End: Complemental strand, 29200941 - 29200871
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||||| || || |||||||||||||||||||||||    
T  29200941 ttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctagggc 29200871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 24139231 - 24139297
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  24139231 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 24139297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 44481307 - 44481373
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  44481307 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 44481373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 656
Target Start/End: Original strand, 16732134 - 16732204
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  16732134 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 16732204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 656
Target Start/End: Original strand, 17710268 - 17710338
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  17710268 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 17710338  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 745
Target Start/End: Original strand, 17877715 - 17877760
Alignment:
Q  700 ttgtattgaacattgattaattaatgataataggtaattttacttt 745  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  17877715 ttgtattgaacattgattaattaatgataatagttaactttgcttt 17877760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 656
Target Start/End: Original strand, 24251640 - 24251710
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  24251640 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 24251710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 656
Target Start/End: Complemental strand, 30493577 - 30493526
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    ||||||||||||| |||||| |||| || |||| ||||||||||||||||||    
T  30493577 tgaagtttgttaggagacaaccaaacatggttgttcatactttagctagggc 30493526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 652
Target Start/End: Complemental strand, 9328588 - 9328522
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagcta 652  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||    
T  9328588 ttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatactttagcta 9328522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 671
Target Start/End: Original strand, 20205156 - 20205241
Alignment:
Q  590 ttacattccaacttct----gaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||||||    |||||||||||| |||||| | || || |||||||||||||||||||||||| |||  ||||||||    
T  20205156 ttacattccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcagcctattcttgggc 20205241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 825
Target Start/End: Original strand, 42857321 - 42857363
Alignment:
Q  783 aaattgcttttctcacatcagttatttcctaaacacacatgga 825  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  42857321 aaattgcttttctcacatcaaatatttcctaaacacacatgga 42857363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 15016443 - 15016378
Alignment:
Q  45 acagtgggcattcatgaccctgctagacccaacttttagtgtggagaatctgatttacataggtta 110  Q
    |||||||||| ||||||| || ||| |||| || |||||||||||||||||||| ||||| |||||    
T  15016443 acagtgggcactcatgacacttctaaacccgacctttagtgtggagaatctgatgtacattggtta 15016378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 652
Target Start/End: Complemental strand, 22767259 - 22767193
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagcta 652  Q
    |||||||||||||||    ||||||||||||| |||||||| || || |||||||||||||||||||    
T  22767259 ttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagcta 22767193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 671
Target Start/End: Original strand, 25731009 - 25731094
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||||||    ||||||||||||| ||| || | || || |||||||||||||||||||||||  |||| ||||||||    
T  25731009 ttacattccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 25731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 605 - 671
Target Start/End: Complemental strand, 11375489 - 11375423
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||  |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  11375489 tgaagtttgttaagagacaagcgaacatagttgctcatactttagctagggcggcctgttcttgggc 11375423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 605 - 671
Target Start/End: Complemental strand, 15988716 - 15988650
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||| |||||| || | || ||||||||||||||||||| |||  |||||| ||||||    
T  15988716 tgaagtttgttaggagacaagcagacatggttgctcatactttagctaaggcggcctgctattgggc 15988650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 4395378 - 4395444
Alignment:
Q  605 tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    ||||||||||||| |||||| | || || |||||||||||||||||||||||  |||| ||||||||    
T  4395378 tgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggc 4395444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 633 - 671
Target Start/End: Original strand, 2885474 - 2885512
Alignment:
Q  633 tgttgctcatactttagctagggcaacctgctcttgggc 671  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  2885474 tgttgctcatactttagctagggcgacctgttcttgggc 2885512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 668
Target Start/End: Complemental strand, 4898585 - 4898524
Alignment:
Q  607 aagtttgttagaagacaaacaaatattgttgctcatactttagctagggcaacctgctcttg 668  Q
    ||||||||||| |||||||| |||||  ||||||||||||||| |||| | ||||| |||||    
T  4898585 aagtttgttaggagacaaacgaatatgattgctcatactttagttaggccgacctgttcttg 4898524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 656
Target Start/End: Original strand, 5609540 - 5609610
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||| | || || ||||||||||| |||||||||||    
T  5609540 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggc 5609610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 652
Target Start/End: Original strand, 23163373 - 23163418
Alignment:
Q  607 aagtttgttagaagacaaacaaatattgttgctcatactttagcta 652  Q
    |||||||||||||||||| | || || |||||||||||||||||||    
T  23163373 aagtttgttagaagacaagcgaacatggttgctcatactttagcta 23163418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 656
Target Start/End: Complemental strand, 34695890 - 34695820
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  34695890 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 34695820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 656
Target Start/End: Complemental strand, 34718302 - 34718232
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagctagggc 656  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||||||    
T  34718302 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggc 34718232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 652
Target Start/End: Original strand, 9710156 - 9710222
Alignment:
Q  590 ttacattccaacttc----tgaagtttgttagaagacaaacaaatattgttgctcatactttagcta 652  Q
    |||||||||||||||    ||||||||||||| |||||| | || || |||||||||||||||||||    
T  9710156 ttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagcta 9710222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 838
Target Start/End: Original strand, 96069 - 96124
Alignment:
Q  783 aaattgcttttctcacatcagttatttcctaaacacacatggacatgattgtttta 838  Q
    |||||||||||||||||||| |||||||||||| ||| ||| | |||| |||||||    
T  96069 aaattgcttttctcacatcaattatttcctaaaaacatatgaaaatgactgtttta 96124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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