View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-2-Insertion-5 (Length: 808)
Name: NF0063-2-Insertion-5
Description: NF0063-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-2-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Original strand, 51360779 - 51361293
Alignment:
| Q |
8 |
caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa |
107 |
Q |
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| T |
51360779 |
caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa |
51360878 |
T |
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| Q |
108 |
ggaattgtgatgaacatatgtagtttacccaccaaagatgaaatgagtagctctatatcctccttgtttcggtttacttactgcttggtactcaacatct |
207 |
Q |
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| T |
51360879 |
ggaattgtgatgaacatatatagtttacccaccaaagatgaaatgagtagctctatatcctccttgtttcggtttacttactgcttggtactcaacatct |
51360978 |
T |
|
| Q |
208 |
ttaacattagtctcatcttttgaatcctgtattttaaaatcaacacattttaagcatatagtttaaaaaatggtgagaaccatttttgtgagatatacta |
307 |
Q |
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| T |
51360979 |
ttaacattagtctcatcttttgaatcctgtattttaaaatcaacacattttaagcatatagtttaaaaaatggtgagaaccatttttgtgagatatacta |
51361078 |
T |
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| Q |
308 |
ttggagaatgattcaataacttcaacaaaaagaagttgaagacgaatatgatgatggttgcataaatcattctgtgtagacacactaaattttatgttcg |
407 |
Q |
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| T |
51361079 |
ttggagaatgattcaataacttcaacaaaaagaagttgaagacgaatatgatgatggttgcataaataattttgtgtagacacgctaaattttatgttcg |
51361178 |
T |
|
| Q |
408 |
attcactcaatcagtttatacaaactttatgcgatagaaataaccgtgaatgccttcatgaatatgctttgaaatccttgaagtgaattgcataagtttc |
507 |
Q |
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| T |
51361179 |
attcactcaatcagtttatacaaactttatgcgatagatataaccgtgaatgccttcatgaatatgctttgaaatccttgaagtgaattgcataagtttc |
51361278 |
T |
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| Q |
508 |
tctcccttctccctt |
522 |
Q |
| |
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| T |
51361279 |
tctccattcttcctt |
51361293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 510 - 790
Target Start/End: Complemental strand, 51363783 - 51363494
Alignment:
| Q |
510 |
tcccttctcccttgtgaaactcgtttgacgttcactcttgtgaat---------atttccactagtgtccaaattcaatggatgtggtgcaacaaatgtt |
600 |
Q |
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| T |
51363783 |
tcccttctcccttgtgaaactcgtttgacgttctctcttgtgaatggctattccatttacactagtgtccaaattcaatggatgtggtgcaacaaatgtt |
51363684 |
T |
|
| Q |
601 |
agtgtacattgcatatcctttaaatccttacnnnnnnn-gtatcaagcattaaaataatgtagaattagtgtggtggcaattacatcgaccatggctaat |
699 |
Q |
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| T |
51363683 |
agtgtacattgcacatcctttaaatccttacaaaaaaaagtatcaagcattaaaataatgtagaattagtgtggtggcaattacatcgaccatggctaat |
51363584 |
T |
|
| Q |
700 |
ttgcaaatgataatcaggttaatttttgacggaatggatatatattcattgaaatttttgaagggaagacaaaaattgaaagaaatgtttg |
790 |
Q |
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| T |
51363583 |
ttgcaaatgataatcaggttaatttttgacggaatggatatatattcattgaaa-gaaagaagggaagacaaaaattgaaagaaatgtttg |
51363494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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