View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063-2-Insertion-6 (Length: 751)

Name: NF0063-2-Insertion-6
Description: NF0063-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063-2-Insertion-6
NF0063-2-Insertion-6
[»] chr3 (4 HSPs)
chr3 (7-339)||(51587939-51588264)
chr3 (488-535)||(51587890-51587938)
chr3 (314-398)||(35301210-35301292)
chr3 (655-705)||(51410939-51410988)
[»] chr1 (5 HSPs)
chr1 (7-201)||(40224938-40225133)
chr1 (205-266)||(40225173-40225234)
chr1 (658-697)||(35529406-35529445)
chr1 (259-310)||(40225299-40225350)
chr1 (655-696)||(50148953-50148994)
[»] chr2 (1 HSPs)
chr2 (259-399)||(18106927-18107065)
[»] scaffold0014 (1 HSPs)
scaffold0014 (655-703)||(124288-124336)
[»] chr5 (1 HSPs)
chr5 (284-387)||(14625533-14625633)
[»] chr7 (4 HSPs)
chr7 (655-704)||(5198647-5198696)
chr7 (154-197)||(37511752-37511795)
chr7 (658-704)||(2790315-2790361)
chr7 (658-699)||(45432081-45432122)
[»] scaffold0501 (1 HSPs)
scaffold0501 (658-706)||(10402-10449)
[»] chr4 (1 HSPs)
chr4 (658-710)||(38160654-38160706)
[»] chr8 (1 HSPs)
chr8 (658-707)||(38779157-38779206)
[»] chr6 (1 HSPs)
chr6 (658-699)||(11785495-11785536)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 51588264 - 51587939
Alignment:
Q  7 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  51588264 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatggagtctacgacgatggataggggcgaaaacattgatgtaatca 51588165  T
Q  106 acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct 205  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51588164 acggcggaggataggtgagagagat--------agagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct 51588073  T
Q  206 gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51588072 gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtggtggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat 51587973  T
Q  306 tgtcgtttgtgaagtagtagaaacaaagatttgt 339  Q
    ||||||||||||||||||||||||||||||||||    
T  51587972 tgtcgtttgtgaagtagtagaaacaaagatttgt 51587939  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 51587938 - 51587890
Alignment:
Q  488 gtttgccca-aaaagctgctggtggaggtgtttgttacgatgaagggac 535  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51587938 gtttgcccagaaaagctgctggtggaggtgtttgttacgatgaagggac 51587890  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 35301292 - 35301210
Alignment:
Q  314 gtgaagtagtagaaacaaagatttgtt--tgtttgttgtttttagaagggaaagaaaggtgaagagaaaaagggttcaggcttatga 398  Q
    |||||| ||||||||||||| |||||   |||||||| ||||||||||||||||    ||||||| |||||||||| | ||||||||    
T  35301292 gtgaagcagtagaaacaaaggtttgtgagtgtttgttatttttagaagggaaag----gtgaagaaaaaaagggtttatgcttatga 35301210  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 705
Target Start/End: Original strand, 51410939 - 51410988
Alignment:
Q  655 aaattgtcacaaaagttgtctaatatgggttgttcaaatatcactgctcat 705  Q
    ||||||||||||||||| ||| |||| ||||||||||||| ||||||||||    
T  51410939 aaattgtcacaaaagttatctcatat-ggttgttcaaataacactgctcat 51410988  T

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Target: chr1 (Bit Score: 140; Significance: 6e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 40224938 - 40225133
Alignment:
Q  7 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca 105  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||  ||||||||||||| ||||||||    
T  40224938 aagagcgacatcagcaatggagtgatacttctgcatctgaaggatttggatccaatggagtctccgacgatggatagcggcgaaaacattgctgtaatca 40225037  T
Q  106 acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtct 201  Q
     |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40225038 gcggcggaggagaggtgagagagatgagaacagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtct 40225133  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 40225173 - 40225234
Alignment:
Q  205 tgaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgg 266  Q
    |||||||| | |||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  40225173 tgaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttgg 40225234  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 697
Target Start/End: Original strand, 35529406 - 35529445
Alignment:
Q  658 ttgtcacaaaagttgtctaatatgggttgttcaaatatca 697  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  35529406 ttgtcacaaaagttgtctaaaatcggttgttcaaatatca 35529445  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 40225299 - 40225350
Alignment:
Q  259 gatgttgggaagaacaaagatcttaggtcgaaatctggctttagaattgtcg 310  Q
    ||||| ||||||||||| ||| || | |||||||||||||||||||||||||    
T  40225299 gatgtcgggaagaacaatgatgttggttcgaaatctggctttagaattgtcg 40225350  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 696
Target Start/End: Complemental strand, 50148994 - 50148953
Alignment:
Q  655 aaattgtcacaaaagttgtctaatatgggttgttcaaatatc 696  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  50148994 aaattgtcacaaaagttgtcaaaaattggttgttcaaatatc 50148953  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 18106927 - 18107065
Alignment:
Q  259 gatgttgggaagaacaaagatcttaggtcgaaatctggctttagaattgtcgtttgtgaagtagtagaaacaaagatttg--tttgtttgttgtttttag 356  Q
    ||||| ||||||||||| ||| || |||||||||||| ||||| ||||||||   |||||  | |||||  |||| ||||  | ||||||||||||||||    
T  18106927 gatgtcgggaagaacaatgatgttgggtcgaaatctgtctttaaaattgtcgcaggtgaaacaatagaatgaaaggtttgggtgtgtttgttgtttttag 18107026  T
Q  357 aagggaaagaaaggtgaagagaaaaagggttcaggcttatgag 399  Q
    ||||||||    ||||||||||||||||||| |||||||||||    
T  18107027 aagggaaa----ggtgaagagaaaaagggtttaggcttatgag 18107065  T

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Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 703
Target Start/End: Original strand, 124288 - 124336
Alignment:
Q  655 aaattgtcacaaaagttgtctaatatgggttgttcaaatatcactgctc 703  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  124288 aaattgtcacataagttgtctaaaatgagttgttcaaatatcactgctc 124336  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 14625633 - 14625533
Alignment:
Q  284 ggtcgaaatctggctttagaattgtcgtttgtgaagtagtagaaacaaagatt-tgtttgtttgttgtttttagaagggaaagaaaggtgaagagaaaaa 382  Q
    ||||| ||||||| ||||||||||||    |||||  | ||||||||||| || ||| |||||||||||||||||||||    |||||||||||||||||    
T  14625633 ggtcggaatctggatttagaattgtcagaggtgaaacaatagaaacaaaggttgtgtgtgtttgttgtttttagaaggg----aaaggtgaagagaaaaa 14625538  T
Q  383 gggtt 387  Q
    |||||    
T  14625537 gggtt 14625533  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 704
Target Start/End: Complemental strand, 5198696 - 5198647
Alignment:
Q  655 aaattgtcacaaaagttgtctaatatgggttgttcaaatatcactgctca 704  Q
    ||||| ||||| ||||||||||| ||| ||||||||||||||||||||||    
T  5198696 aaattatcacataagttgtctaaaatgagttgttcaaatatcactgctca 5198647  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 37511752 - 37511795
Alignment:
Q  154 gcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgc 197  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  37511752 gcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgc 37511795  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 704
Target Start/End: Original strand, 2790315 - 2790361
Alignment:
Q  658 ttgtcacaaaagttgtctaatatgggttgttcaaatatcactgctca 704  Q
    |||||||| ||||||||||| ||| ||||||||||||||||| ||||    
T  2790315 ttgtcacataagttgtctaaaatgagttgttcaaatatcactactca 2790361  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 699
Target Start/End: Original strand, 45432081 - 45432122
Alignment:
Q  658 ttgtcacaaaagttgtctaatatgggttgttcaaatatcact 699  Q
    |||||||| ||||||||||| ||| |||||||||||||||||    
T  45432081 ttgtcacataagttgtctaaaatgagttgttcaaatatcact 45432122  T

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Target: scaffold0501 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 706
Target Start/End: Complemental strand, 10449 - 10402
Alignment:
Q  658 ttgtcacaaaagttgtctaatatgggttgttcaaatatcactgctcatt 706  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  10449 ttgtcacaaaagttgtctcatatgg-ttgttcaaataacactgctcatt 10402  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 710
Target Start/End: Complemental strand, 38160706 - 38160654
Alignment:
Q  658 ttgtcacaaaagttgtctaatatgggttgttcaaatatcactgctcattaaat 710  Q
    |||||||| ||||||||||| ||| ||||||||||||||||| ||||| ||||    
T  38160706 ttgtcacataagttgtctaaaatgagttgttcaaatatcactactcataaaat 38160654  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 707
Target Start/End: Original strand, 38779157 - 38779206
Alignment:
Q  658 ttgtcacaaaagttgtctaatatgggttgttcaaatatcactgctcatta 707  Q
    |||||||| || |||||||| ||| ||||||||||||||||| |||||||    
T  38779157 ttgtcacataaattgtctaaaatgagttgttcaaatatcactactcatta 38779206  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 699
Target Start/End: Original strand, 11785495 - 11785536
Alignment:
Q  658 ttgtcacaaaagttgtctaatatgggttgttcaaatatcact 699  Q
    |||||||| ||||||||||| ||| |||||||||||||||||    
T  11785495 ttgtcacataagttgtctaaaatgagttgttcaaatatcact 11785536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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