View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-2-Insertion-9 (Length: 470)
Name: NF0063-2-Insertion-9
Description: NF0063-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-2-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 195 - 470
Target Start/End: Complemental strand, 39825531 - 39825255
Alignment:
| Q |
195 |
tcctaacctcagaagaaaagggtatctttctcttttgtagccatgaaaatgatttctgtttttcagtacatatctgataaagcctgttaccttttttaag |
294 |
Q |
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| T |
39825531 |
tcctaacctcagaagaaaagggtatctttctcttttgtagccatgaaaatgatttctgtttttcagtacatatctgataaagcctgttaccttttttaag |
39825432 |
T |
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| Q |
295 |
aacggtctcttttacttaatttgacttcaaatatgttttttcgggatatgagtttattcatgatgagtctcttttagcaagaaacaagaatattattatc |
394 |
Q |
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| T |
39825431 |
aacggtctcttttacttaatttgacttcaaatatgttttttcgggatatgagtttattcatgatcagtctcttttagcaagaaacaagaatattattatc |
39825332 |
T |
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| Q |
395 |
cccacttataaacctgaaacgt-cctttttctttcttcctttgattcatgtgcagaatttttcacataaactctact |
470 |
Q |
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| T |
39825331 |
cccacttataaacctgaaacgtccctttttctttcttcctttgattcatgtgcagaatttttcacataaactctact |
39825255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 39825712 - 39825584
Alignment:
| Q |
8 |
caaatgacccgtgagatggaagagtgaatcaaatacacgacaaaatctcaactctcaaatacaaacaattttgtggccggctacttcacatgccaccaaa |
107 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825712 |
caaatgacccgtgagatgaaagagtgaatcaaatacacgacaaaatctcaactc--aaatacaaacaattttgtggccggctacttcacatgccaccaaa |
39825615 |
T |
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| Q |
108 |
atccaatactacaatttacagattacaggta |
138 |
Q |
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| T |
39825614 |
atccaatactacaatttacagattacaggta |
39825584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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