View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-Insertion-1 (Length: 642)
Name: NF0063-Insertion-1
Description: NF0063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 8e-66; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 37164675 - 37164527
Alignment:
| Q |
76 |
ataacctgtgtttatgcagaatctagctatttaagttatcacgacctcacttcaaaatacatattatctctaattgacttctgaatacatatcatcttta |
175 |
Q |
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| T |
37164675 |
ataacccgtgtttatgcagaatctagctattt----tatcacgacctcacttcaaaatacatattatctctaattgacttctgaatacatatcatcttta |
37164580 |
T |
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| Q |
176 |
attgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
228 |
Q |
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| T |
37164579 |
gttgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
37164527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 507 - 642
Target Start/End: Complemental strand, 37162687 - 37162552
Alignment:
| Q |
507 |
ctcgcgatgtaaagcaatgctgtatttttatatggcattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattg |
606 |
Q |
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| T |
37162687 |
ctcgcgatgtatagcaatgctgtatttttatatggcattattaacttctgactgcccatacaagagtggagtaatgttgcaaaatagtggattttgattg |
37162588 |
T |
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| Q |
607 |
gatattagtgtaaaactgttttcttctgacggtgta |
642 |
Q |
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| T |
37162587 |
gatattagtgtaaaactgttttcttctgacggtgta |
37162552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 513
Target Start/End: Complemental strand, 37162730 - 37162695
Alignment:
| Q |
478 |
atcaaaggctttttgctgtcgggataacactcgcga |
513 |
Q |
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| T |
37162730 |
atcaaaggctttttgctgtcgggataacactcgcga |
37162695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 37164739 - 37164707
Alignment:
| Q |
47 |
taagcatgtgttaatcttttcaaatacatataa |
79 |
Q |
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| T |
37164739 |
taagcatgtgttaatcttttcaaatacatataa |
37164707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 37162793 - 37162748
Alignment:
| Q |
398 |
accagtgctgtattgtgtggtaaaccgcctgaaagctatgtggggcctt |
446 |
Q |
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| T |
37162793 |
accagtgctgtattgtg--gtaa-ccgcctgaaagctatgtggggcctt |
37162748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 624
Target Start/End: Complemental strand, 596529 - 596447
Alignment:
| Q |
542 |
cattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaactg |
624 |
Q |
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| T |
596529 |
cattattaacttgtaactacccatacaagagtggggttatgtggcaaaatagttgattttgattgaatgttagtgtaaaactg |
596447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 571 - 622
Target Start/End: Original strand, 49250276 - 49250327
Alignment:
| Q |
571 |
agtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaac |
622 |
Q |
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| T |
49250276 |
agtggggtgatgttgcaaaatagtggattttcattggatgttaatgtaaaac |
49250327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 629
Target Start/End: Complemental strand, 17511398 - 17511349
Alignment:
| Q |
580 |
atgttgcaaaatagtggattttgattggatattagtgtaaaactgttttc |
629 |
Q |
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| T |
17511398 |
atgtggcaaagtagtggattttcattggatgtcagtgtaaaactgttttc |
17511349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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