View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-Insertion-2 (Length: 487)
Name: NF0063-Insertion-2
Description: NF0063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 2347499 - 2347979
Alignment:
| Q |
8 |
aatgtcacaacaa-ctacaggtgggttctgaagttcaagctgatttagttcaggaa-gatagaaaacatactcagtgttcattgaaagagactttttgat |
105 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
2347499 |
aatgtcacaacaatctacaggtgggttctgaagttcaagctgatttagttcaggattgatc-aaaacatactcagtgttcattgaaagaaactttttgat |
2347597 |
T |
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| Q |
106 |
gtagcgcaaaatcctacaaatagacgagaaactaggacgctgagacggatcagtttgccaacattttttgatcaaactcacaagatattttggcgaacga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2347598 |
gtagcgcaaaatcctacaaatagacgagaaactaggacgctgagacggatcagtttgccaacattttttgatcaaactcacaagatattttggcgaacga |
2347697 |
T |
|
| Q |
206 |
tatggaaacaaaggtctctctcctgctttgatattttggttggttctaatcccttgaagatgattgtcctcaaaaggaattttccctgtcaacaactcaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2347698 |
tatggaaacaaaggtctctctcctgctttgatattttggttggttctaatcccttgaagatgattgtcctcaaaaggaattttccctgtcaacaactcaa |
2347797 |
T |
|
| Q |
306 |
aacatatcataccaaagctatatgcatcggctttctctgagtacttacaagaggtaaaagcatttttcatttgttctagctcagttaaaacctcaggtgc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2347798 |
aacatatcataccaaagctatatgcatcggctttctctgagtacttacaagaggtaaaagcatttttcatttgttctagctcagttaaaacctcaggtgc |
2347897 |
T |
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| Q |
406 |
ataccaaattatagggttaatctcttcaccaattggattatgtgtcggtgaggatctagaagcattataaatttcaccattt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2347898 |
ataccaaattatagggttaatctcttcaccaattggattatgtgtcggtgaggatctagaagcattataaatttcaccattt |
2347979 |
T |
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