View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063-Insertion-3 (Length: 379)
Name: NF0063-Insertion-3
Description: NF0063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 52053089 - 52052718
Alignment:
| Q |
8 |
ggttgtccaacctttaaaaacttcaaatcattctctaaaggtgtaaaattcaaatccagaaacaaaaatctcttgctgtttcccttgctcctctttgctg |
107 |
Q |
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| T |
52053089 |
ggttgtccaacctttaaaaacttcaaatcattctctaaaggtgtaaaattcaaatccagaaacaaaaatctcttgctgtttcccttgctcctctttgctg |
52052990 |
T |
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| Q |
108 |
aatcagtattagtactattatcaattgtactgcaaccactattgctgctactagtagttgtagtagtcataaaattatgcatgtttccatttgagttatt |
207 |
Q |
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| T |
52052989 |
aatcagtattagtactattatcaattgtactgcaaccactattgctgctactagtagttgtagtagtcataaaattatgcatgtttccatttgagttatt |
52052890 |
T |
|
| Q |
208 |
agcttttgatgattctgttcttctgtgtcttctcatgtgaccacccaaagcttgtcctattccaaattctaatccacaaatagaacatgcatgcgtttta |
307 |
Q |
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| T |
52052889 |
agcttttgatgattctgttcttctgtgtcttctcatgtgaccacccaaagcttgtcctattccaaattctaatccacaaatagaacatgcatgcgtttta |
52052790 |
T |
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| Q |
308 |
gccttcgtcgttgatgtaagtattgaaccatgatgatcatcaccatcactagtcatctccatcaacctcggt |
379 |
Q |
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| T |
52052789 |
gccttcgtcgttgatgtaagtattgaaccatgatgatcatcaccatcactagtcatctccatcaacctcggt |
52052718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 7687743 - 7687818
Alignment:
| Q |
233 |
tgtcttctcatgtgaccacccaaagcttgtcctattccaaattctaatccacaaatagaacatgcatgcgttttag |
308 |
Q |
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| T |
7687743 |
tgtctcctcatgtggccacctaaagcttgtcctattgcaaactccaatccacaaatagaacactcatgtgttttag |
7687818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 32504412 - 32504358
Alignment:
| Q |
254 |
aaagcttgtcctattccaaattctaatccacaaatagaacatgcatgcgttttag |
308 |
Q |
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| T |
32504412 |
aaagcttgtcctattgcaaactccaatccacaaatagaacattcaagtgttttag |
32504358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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