View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063-Insertion-4 (Length: 175)
Name: NF0063-Insertion-4
Description: NF0063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063-Insertion-4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr6 (6 HSPs) |
| |
|
| [»] scaffold0428 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 17441864 - 17442031
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17441864 |
gcatccatgtcatccacagaaaaaaatctcgaaccgccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttacagatgaagt |
17441963 |
T |
|
| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
175 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
17441964 |
ttctactgaatctccacagaaaaaaatcttgaacctccatatcattggtcgattcattggtcagttcc |
17442031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 3e-34; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 33283672 - 33283505
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
| |
|
|||| |||||||||||||| |||| |||| ||||||||||||||||| |||||||||| | ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
33283672 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccggattcacctgttgcagatgaagt |
33283573 |
T |
|
| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
175 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
33283572 |
ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcgattcattggtcggttcc |
33283505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 33357966 - 33357835
Alignment:
| Q |
34 |
tctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacagnnnnnnn |
133 |
Q |
| |
|
|||| |||| |||||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33357966 |
tctcaaacctccatatcagccaaagaaacagaagaatccgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacag-aaaaaa |
33357868 |
T |
|
| Q |
134 |
tcttgaacctccatatcattgttcaattcattg |
166 |
Q |
| |
|
||| ||||||||||||||||| || |||||||| |
|
|
| T |
33357867 |
tctcgaacctccatatcattggtcgattcattg |
33357835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 33387144 - 33386977
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
| |
|
|||| |||||||||||||| |||| |||| ||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
33387144 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagt |
33387045 |
T |
|
| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
175 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
33387044 |
ttctactgaatctcaacagaaaaaaatctcaaacctccatatcatttgtcgattcattggtcggttcc |
33386977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 33261612 - 33261510
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
| |
|
|||| |||||||||||||| |||| |||| ||||||||||||||||| |||||||||| | ||||| |||||||||||||| |||||||||||| |
|
|
| T |
33261612 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccagattcacctgctgcagatgaagt |
33261513 |
T |
|
| Q |
108 |
ttc |
110 |
Q |
| |
|
||| |
|
|
| T |
33261512 |
ttc |
33261510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 33418536 - 33418459
Alignment:
| Q |
45 |
catatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc |
122 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
33418536 |
catatcagccacagaaacggaagtatccgtggaggtacaagattcacctgttgccgatgaagtttctggtgaatctcc |
33418459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 33302962 - 33302888
Alignment:
| Q |
48 |
atcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc |
122 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
33302962 |
atcagccacagaaacggaagtatctgtggaggtacaagattcacctgttatcgatgaagtttctagtgaatctcc |
33302888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 5435 - 5268
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
| |
|
|||| |||||||||||||| |||| |||| ||||||||||||||||| | |||||||| | ||||| ||| |||||||||||||| ||||||| |
|
|
| T |
5435 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaactgaagtatccgcggaggcaccgaattcacctgttgcaaatgaagt |
5336 |
T |
|
| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc |
175 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5335 |
ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcaattcattggtcggttcc |
5268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 667 times since January 2019
Visitors: 1282