View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_1D_high_7 (Length: 282)

Name: NF0063_1D_high_7
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_1D_high_7
NF0063_1D_high_7
[»] chr3 (5 HSPs)
chr3 (13-270)||(11897148-11897405)
chr3 (12-270)||(26432588-26432846)
chr3 (85-169)||(23424570-23424654)
chr3 (12-127)||(53608336-53608451)
chr3 (12-166)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (13-270)||(23132475-23132732)
chr8 (66-169)||(26587277-26587380)
chr8 (107-265)||(14760016-14760174)
chr8 (12-103)||(38348466-38348557)
[»] chr2 (11 HSPs)
chr2 (13-270)||(14653570-14653827)
chr2 (17-166)||(26791322-26791471)
chr2 (12-163)||(40328174-40328325)
chr2 (12-163)||(35135219-35135370)
chr2 (69-178)||(16322502-16322611)
chr2 (12-163)||(3779048-3779199)
chr2 (69-166)||(573245-573342)
chr2 (13-151)||(19265413-19265551)
chr2 (21-166)||(177504-177649)
chr2 (115-166)||(35062956-35063007)
chr2 (85-171)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (13-270)||(20284849-20285106)
chr1 (11-178)||(50236550-50236717)
chr1 (11-166)||(50451893-50452048)
chr1 (69-127)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (12-163)||(54477407-54477558)
chr4 (59-169)||(14307826-14307936)
chr4 (59-169)||(14291777-14291887)
chr4 (69-166)||(3881771-3881868)
chr4 (17-169)||(46784469-46784621)
chr4 (12-103)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (76-166)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (60-166)||(32874457-32874563)
chr5 (12-166)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (12-169)||(24893833-24893990)
chr6 (85-169)||(24990660-24990744)
chr6 (69-175)||(13599639-13599745)
chr6 (69-126)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (69-172)||(16769956-16770059)
chr7 (30-163)||(1353794-1353927)
chr7 (21-166)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  |||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacc 211  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || ||| ||||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  212 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  85 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  112 tccgacaaggtgatcc 127  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| |||||||| || || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    || |||||||||||||| | || || || || |||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 26587277 - 26587380
Alignment:
Q  66 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 165  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaac 26587376  T
Q  166 tttc 169  Q
    ||||    
T  26587377 tttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 265
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  107 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 206  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  207 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 265  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 38348466 - 38348557
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttc 103  Q
    ||||||||||||||||||||||||||||| ||  | || || |  | |||||| ||||||||||| ||||  ||| | ||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttc 38348557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  17 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 116  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  117 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    || ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 40328174 - 40328325
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||| |||||||| |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 35135370 - 35135219
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 168  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  169 cagctgctat 178  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 3779199 - 3779048
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||| |||||||| |||||||||||||| ||  | || || || |||||  || | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  3779199 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcattgttatggaatggaaacaagctctctcctttcaagcctactcatggac 3779100  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779099 ttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 19265413 - 19265551
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||| |||||||| |||||||||||||| ||  | || || || |||||  || | |||||||| |||||| |  | |||||||||||| | ||||| ||    
T  19265413 acattaccatcaaactcatcatgcattgtgttacctcaccaagctactccttgttatggaatggaaacaagctctctcctttcaagcctactcatggact 19265512  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcct 151  Q
     || |||||||| ||| |||| |||||||||||||||||    
T  19265513 tcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  21 atcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 120  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  121 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  115 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  85 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 171  Q
    |||| |||||||||||  | ||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||   ||||||||||||| ||||||| ||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  11 ggacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggc 110  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||| ||||||||| |||| |||||||||||| | ||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  111 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 178  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  11 ggacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatgg 109  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | |||||||| |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  110 cctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    ||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 127  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  59 ctctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 158  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  159 gaaaagctttc 169  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 14291777 - 14291887
Alignment:
Q  59 ctctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 158  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| | || |||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatg 14291876  T
Q  159 gaaaagctttc 169  Q
    ||||| |||||    
T  14291877 gaaaaactttc 14291887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  17 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 116  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | ||||||||||| || || |||||||||||||| ||| | ||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  117 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    |||||||||||  | || || || || ||||||||||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttc 103  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||||||| || |||||||| |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  76 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  60 tctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 159  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  160 aaaagct 166  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||||||||||||  | ||  ||||||||||| | ||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggc 110  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||  | |||||||| |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  111 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  85 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 168  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  169 cagctgc 175  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 126  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 168  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  169 cagc 172  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 1353927 - 1353794
Alignment:
Q  30 atcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgt 129  Q
    |||||||||||||| || ||  | | || |||||| || | ||||||||| ||| || | || ||||||||| | |||||||||  ||||||||||||      
T  1353927 atcatgcattgcgttgcctcctccactttctctatcctctcgaatgggaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccac 1353828  T
Q  130 tgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || || ||||||||||| ||||| ||||||||    
T  1353827 tctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  21 atcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 120  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||| | ||||||||||| || ||  | ||| | ||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  121 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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