View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_1D_low_1 (Length: 421)
Name: NF0063_1D_low_1
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 10996026 - 10996404
Alignment:
| Q |
9 |
ggacatcaaagagtacgtacaacaatgtgtaatatgccaacatgcgaagaaaattaacacatcaccagttgggttgcttcaacctcttccaataccaaac |
108 |
Q |
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| T |
10996026 |
ggacatcaaggagtacgtacaacaatgtgtaatatgccaacaagccaagacaattaagacatcaccagctgggttgcttcaacctcttccaataccaaac |
10996125 |
T |
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| Q |
109 |
caggtataggaagatattgcaatggactttataactgggctacctacttcttttggatttaccataattttggtagtaatagacaggctgacaaaatata |
208 |
Q |
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| T |
10996126 |
caggtatgggaagatattgcaatggactttataactgggctacctacttcttttggatttaccgtgattacggtagtaatagataggctgacaaaatata |
10996225 |
T |
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| Q |
209 |
gccattttgtggctatgaaatcagattactcaaagtctgtagctgaagcattcatgaataacattgcaaaactacatggcattcccaagtccattgtttg |
308 |
Q |
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| T |
10996226 |
gccattttgtggctattaaatcagattactcaaagtctgtagccgaagcattcatgaataacactgaaaaactacatggcattcccaagtccattgtttc |
10996325 |
T |
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| Q |
309 |
aaatagagataaggtttttacaagtggattatggcagaacttgtttaaactgcagggcacatctttggccatgagcaca |
387 |
Q |
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| T |
10996326 |
aaatagagacaaggtttttacaagtggattctggcagaacttgtttaaactgcagggcacatctttggccatgagcaca |
10996404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 398
Target Start/End: Original strand, 7666262 - 7666379
Alignment:
| Q |
281 |
tacatggcattcccaagtccattgtttgaaatagagataaggtttttacaagtggattatggcagaacttgtttaaactgcagggcacatctttggccat |
380 |
Q |
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|||||||||| || ||||||||||| | | |||||||||| |||||||||||| ||| |||||| | |||||| | |||||||||| ||||| | || |
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| T |
7666262 |
tacatggcatacctaagtccattgtgtcagatagagataaagtttttacaagtaaattttggcagcagttgtttgagttgcagggcactactttgtcaat |
7666361 |
T |
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| Q |
381 |
gagcacagcctaccaccc |
398 |
Q |
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||| |||| |||||||| |
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| T |
7666362 |
gagttcagcataccaccc |
7666379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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