View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_1D_low_22 (Length: 234)
Name: NF0063_1D_low_22
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_22 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 15091117 - 15090891
Alignment:
| Q |
8 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
107 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15091117 |
tggacatcgcgaaggtcacatggttcactatctcgacccgtttttggttacaaggttgtcacacagaatgaaggtagaaatggcgattgggttatggttc |
15091018 |
T |
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| Q |
108 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15091017 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccacaggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
15090918 |
T |
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| Q |
208 |
acacactatcaacacttcaaattggcg |
234 |
Q |
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| T |
15090917 |
acacactgccaacactggaaattggcg |
15090891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 35074796 - 35075022
Alignment:
| Q |
8 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
107 |
Q |
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| T |
35074796 |
tggacatcgcgaaggtcacatggttcactatctcgacccatttttggtaacaaggttgtcacacagaatgaaggtagaaatggcgatcgggttatggttc |
35074895 |
T |
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| Q |
108 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
207 |
Q |
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| T |
35074896 |
ataataacaaagacaatcatgatcgttttcttggaggaaacagttgaggaaaattcacaggtggtgcacgtggaatgtttaatgttcgacaaaacaaaac |
35074995 |
T |
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| Q |
208 |
acacactatcaacacttcaaattggcg |
234 |
Q |
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| T |
35074996 |
acacactgccaacactggaaattggcg |
35075022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 43010593 - 43010789
Alignment:
| Q |
32 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
131 |
Q |
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| T |
43010593 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43010692 |
T |
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| Q |
132 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
231 |
Q |
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| T |
43010693 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43010786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 43012890 - 43013086
Alignment:
| Q |
32 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43012890 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43012989 |
T |
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| Q |
132 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
231 |
Q |
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| T |
43012990 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtgaaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43013083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 25203934 - 25203708
Alignment:
| Q |
8 |
tggacatcacgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttc |
107 |
Q |
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| T |
25203934 |
tggacatcgagaaggtcacatggttcactatctcgacctgtttttggtaacaaggttgttacacaaaatgaaggtagaaagggcgattgggttatggttc |
25203835 |
T |
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| Q |
108 |
gtaataacaaagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaac |
207 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||| |
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| T |
25203834 |
gtaataacaaagacaatcgtgatcattttcctggaggaaacagtggaggaagatccataggtggtttgcgtggaatgtttaatgttagacaaaacaaaac |
25203735 |
T |
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| Q |
208 |
acacactatcaacacttcaaattggcg |
234 |
Q |
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|||||||| ||||| | ||||||||| |
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| T |
25203734 |
acacactaccaacattggaaattggcg |
25203708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 25676775 - 25676579
Alignment:
| Q |
32 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25676775 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
25676676 |
T |
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| Q |
132 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
231 |
Q |
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|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25676675 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
25676582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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