View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_1D_low_23 (Length: 232)
Name: NF0063_1D_low_23
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 42540012 - 42539832
Alignment:
| Q |
3 |
gaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttca |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42540012 |
gaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttca |
42539913 |
T |
|
| Q |
103 |
gtgccattcaatcactgcaacataagaaaaca-cggagactattgatgatctagttgcaacagtggaaaaatcatttgaaa |
182 |
Q |
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|||||||||||||||||||||||||| || || || |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42539912 |
gtgccattcaatcactgcaacataaggaagcaccgaagactattgatgatctagttgcggcagtggaaaaatcatttgaaa |
42539832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 42539062 - 42539017
Alignment:
| Q |
187 |
actgaacttcatcacccacctcttcaaatgcagcaacttccaagga |
232 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
42539062 |
actgaacttcatcacccagctcttcaaatgcaacaacttccaagga |
42539017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 37934218 - 37934282
Alignment:
| Q |
48 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
112 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||||| || || ||||| ||||| |
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| T |
37934218 |
atgtgtcaacctccaaattctcctgatctaaatgtcttagaccttgggttttttagtgcgattca |
37934282 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 1329542 - 1329722
Alignment:
| Q |
3 |
gaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttca |
102 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329542 |
gaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttca |
1329641 |
T |
|
| Q |
103 |
gtgccattcaatcactgcaacataagaaaaca-cggagactattgatgatctagttgcaacagtggaaaaatcatttgaaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||| || || || |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1329642 |
gtgccattcaatcactgcaacataaggaagcaccgaagactattgatgatctagttgcggcagtggaaaaatcatttgaaa |
1329722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 1330491 - 1330536
Alignment:
| Q |
187 |
actgaacttcatcacccacctcttcaaatgcagcaacttccaagga |
232 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
1330491 |
actgaacttcatcacccagctcttcaaatgcaacaacttccaagga |
1330536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 10328604 - 10328668
Alignment:
| Q |
48 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
112 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||||| || || ||||| ||||| |
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| T |
10328604 |
atgtgtcaacctccaaattctcctgatctaaatgtcttagaccttgggttttttagtgcgattca |
10328668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 38670571 - 38670528
Alignment:
| Q |
187 |
actgaacttcatcacccacctcttcaaatgcagcaacttccaag |
230 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
38670571 |
actgaacttcatcaccaagctcttcaaatgcagcaacttccaag |
38670528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 17650967 - 17651147
Alignment:
| Q |
3 |
gaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17650967 |
gaatttcgtcaagctgcctcacaagatggtttcgacattcgattgatgtgtcaacctcccaattcccttgaactaaatgtcttagaccttggcttcttca |
17651066 |
T |
|
| Q |
103 |
gtgccattcaatcactgcaacataagaaaaca-cggagactattgatgatctagttgcaacagtggaaaaatcatttgaaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17651067 |
gtgccattcaatcactgcaacataaggaaacaccgaagactattgatgatctagttgcggcagtggaaaaatcatttgaaa |
17651147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 17783188 - 17783008
Alignment:
| Q |
3 |
gaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttca |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
17783188 |
gaatttcgtcaagcttcctcacaagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttgggttcttta |
17783089 |
T |
|
| Q |
103 |
gtgccattcaatcactgcaacataagaaaaca-cggagactattgatgatctagttgcaacagtggaaaaatcatttgaaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
17783088 |
gtgccattcaatcactgcaacataaggaaacaccgaagactattgatgatctagttgcggcagtagaaaaatcatttgaaa |
17783008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 17781933 - 17781888
Alignment:
| Q |
187 |
actgaacttcatcacccacctcttcaaatgcagcaacttccaagga |
232 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
17781933 |
actgaacttcatcacccagctcttcaaatgcaacaacttccaagga |
17781888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 19839433 - 19839478
Alignment:
| Q |
187 |
actgaacttcatcacccacctcttcaaatgcagcaacttccaagga |
232 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
19839433 |
actggacttcatcacccagctcttcaaatgcaacaacttccaagga |
19839478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 384661 - 384725
Alignment:
| Q |
48 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
112 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||| || || ||||| ||||| |
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|
| T |
384661 |
atgtgtcaacctccaaattcccctgatctaaatgtcttagaccttgggttttttagtgcgattca |
384725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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