View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_1D_low_28 (Length: 218)
Name: NF0063_1D_low_28
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_28 |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 10787238 - 10787425
Alignment:
| Q |
20 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattc |
119 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
10787238 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattc |
10787337 |
T |
|
| Q |
120 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
10787338 |
tgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtgatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 14688555 - 14688368
Alignment:
| Q |
20 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattc |
119 |
Q |
| |
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|||||||||||| |||||| |||| || || ||||| ||||||||||||||| || ||||| ||||||||| |||||||||| ||||||| |||||| |
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| T |
14688555 |
atcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagccagcatccatggcattc |
14688456 |
T |
|
| Q |
120 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
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| |||||| |||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||| |
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| T |
14688455 |
ttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtgatgtccat |
14688368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 7360557 - 7360370
Alignment:
| Q |
20 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattc |
119 |
Q |
| |
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|||||||||||| ||||| |||| || |||||||| |||||||||||||||||| ||||||||||| ||| |||||||||| ||||||| |||||| |
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| T |
7360557 |
atcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc |
7360458 |
T |
|
| Q |
120 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
| |
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| ||| || |||||||||||||| | |||||||||||| |||| |||||| ||||||||||||| |||||| |||||||| ||||||| |
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| T |
7360457 |
ttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtggtgtccat |
7360370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
21 |
tcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattct |
120 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
121 |
gcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||| |||||||||| |
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| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 22081094 - 22081242
Alignment:
| Q |
59 |
aagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattctgcaacaagccttggatggtaggaatgcagggctcaggg |
158 |
Q |
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|||||||||||||||||| |||||||| || ||| ||||||| || ||||||| || |||| | || |||| || |||||||||||| |||||| |
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| T |
22081094 |
aagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaata |
22081193 |
T |
|
| Q |
159 |
tccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||| |||||||||| |
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| T |
22081194 |
tccaacataaattgggtacatctcaaaatgcaaaacatatgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 1730056 - 1730243
Alignment:
| Q |
20 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattc |
119 |
Q |
| |
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|||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
1730056 |
atcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattc |
1730155 |
T |
|
| Q |
120 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
| |
|
| || ||| ||||||| ||||||||| ||||||||||||| || |||||| || |||||||||| |||||| ||||| |||||||||| |
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| T |
1730156 |
ttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatgatgtccat |
1730243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 24954790 - 24954977
Alignment:
| Q |
20 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattc |
119 |
Q |
| |
|
|||||||||||| |||||| |||| || || ||||| |||||||||||||||||| ||||||||||| ||| |||||||||| ||||||| |||||| |
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| T |
24954790 |
atcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc |
24954889 |
T |
|
| Q |
120 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
| |
|
| || |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||| |
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|
| T |
24954890 |
ttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtgttgtccat |
24954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 23195827 - 23195767
Alignment:
| Q |
137 |
ggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
197 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||| || || |||| ||||||||||||| |
|
|
| T |
23195827 |
ggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgcaaaacatg |
23195767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 14329086 - 14328899
Alignment:
| Q |
20 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattc |
119 |
Q |
| |
|
|||||||||||| |||||| |||| || || ||||| |||||||||||||||||| ||||||||||| ||| |||||||||| ||||||| |||||| |
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|
| T |
14329086 |
atcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggcattc |
14328987 |
T |
|
| Q |
120 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
207 |
Q |
| |
|
| || ||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
14328986 |
ttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtgatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 39027 - 39171
Alignment:
| Q |
53 |
accgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattctgcaacaagccttggatggtaggaatgcagggc |
152 |
Q |
| |
|
||||| |||||| ||||||| |||||| ||||| || ||| ||||||| || |||||||||| ||| | ||| | || || |||||||||||| ||| |
|
|
| T |
39027 |
accgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttgacggtaggaatgcatggc |
39126 |
T |
|
| Q |
153 |
tcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
197 |
Q |
| |
|
|| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
39127 |
tcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
39171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 32711 - 32567
Alignment:
| Q |
53 |
accgttaagcgccctcagcagtacatcgaagtacagggcgatcacagagccgacatccatagcattctgcaacaagccttggatggtaggaatgcagggc |
152 |
Q |
| |
|
||||| |||||| ||||||| |||||| ||||| || ||| ||||||| || |||||||||| ||| | ||| | || || |||||||||||| ||| |
|
|
| T |
32711 |
accgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttgacggtaggaatgcatggc |
32612 |
T |
|
| Q |
153 |
tcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
197 |
Q |
| |
|
|| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
32611 |
tcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
32567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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