View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_1D_low_29 (Length: 213)
Name: NF0063_1D_low_29
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_29 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 12171211 - 12171416
Alignment:
| Q |
10 |
ttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaa |
109 |
Q |
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| T |
12171211 |
ttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaa |
12171310 |
T |
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| Q |
110 |
ctgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgatt |
207 |
Q |
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| T |
12171311 |
ctgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgatt |
12171410 |
T |
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| Q |
208 |
ctttcc |
213 |
Q |
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||||| |
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| T |
12171411 |
atttcc |
12171416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 12415639 - 12415844
Alignment:
| Q |
10 |
ttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaactgcttgtgctggaa |
109 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||| |
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| T |
12415639 |
ttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaactgcttgtgctagaa |
12415738 |
T |
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| Q |
110 |
ctgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgttttcactggtgatt |
207 |
Q |
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| T |
12415739 |
ctgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgatt |
12415838 |
T |
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| Q |
208 |
ctttcc |
213 |
Q |
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||||| |
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| T |
12415839 |
atttcc |
12415844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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