View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_1D_low_32 (Length: 205)
Name: NF0063_1D_low_32
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 14321323 - 14321448
Alignment:
| Q |
1 |
gatacaacaccgcatcacgacccttgacaaacctttaagtcgactacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttttaccaccg |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14321323 |
gatacaacaccgcatcgcgacccttgacaaacctttaagtcgacgacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttgtaccaccg |
14321422 |
T |
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| Q |
101 |
gtagaaaggcgacacacgatgtccat |
126 |
Q |
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| T |
14321423 |
gtagaaaggcgacacacaatgtccat |
14321448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41907784 - 41907708
Alignment:
| Q |
1 |
gatacaacaccgcatcacgacccttgacaaacctttaagtcgactacatctaagaggacaaccgaagaaggttggga |
77 |
Q |
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||||||||||| ||||| ||||||| |||||||| |||| || |||| ||||||||||||| |||| ||||||| |
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| T |
41907784 |
gatacaacaccatatcacaacccttggaaaacctttcagtcaacggcatcgaagaggacaaccggagaatgttggga |
41907708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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