View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_1D_low_33 (Length: 204)

Name: NF0063_1D_low_33
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_1D_low_33
NF0063_1D_low_33
[»] chr6 (13 HSPs)
chr6 (14-204)||(24767430-24767620)
chr6 (13-204)||(18651240-18651431)
chr6 (14-204)||(2553581-2553771)
chr6 (14-185)||(12734069-12734240)
chr6 (66-204)||(21168194-21168333)
chr6 (41-189)||(15958834-15958982)
chr6 (95-183)||(17606361-17606449)
chr6 (81-182)||(17579109-17579210)
chr6 (81-182)||(17573683-17573784)
chr6 (91-183)||(21630134-21630226)
chr6 (95-183)||(10577276-10577364)
chr6 (41-183)||(20883060-20883202)
chr6 (48-187)||(13937678-13937817)
[»] chr7 (10 HSPs)
chr7 (14-204)||(47876927-47877117)
chr7 (14-204)||(235443-235635)
chr7 (14-204)||(11277258-11277448)
chr7 (14-204)||(37919488-37919678)
chr7 (14-204)||(17720579-17720769)
chr7 (14-204)||(29967919-29968109)
chr7 (14-204)||(4938134-4938324)
chr7 (95-183)||(18532653-18532741)
chr7 (119-183)||(25619508-25619572)
chr7 (119-183)||(37254807-37254871)
[»] chr5 (23 HSPs)
chr5 (13-204)||(28535681-28535872)
chr5 (13-204)||(35983797-35983988)
chr5 (13-201)||(42928074-42928262)
chr5 (14-204)||(23238328-23238518)
chr5 (14-204)||(30732320-30732510)
chr5 (14-204)||(12825143-12825333)
chr5 (14-192)||(8227970-8228148)
chr5 (14-204)||(27117167-27117357)
chr5 (14-204)||(42513664-42513854)
chr5 (13-178)||(19255154-19255320)
chr5 (71-204)||(31641513-31641645)
chr5 (81-183)||(25857451-25857553)
chr5 (91-183)||(27767063-27767155)
chr5 (13-124)||(12820035-12820146)
chr5 (81-183)||(8300209-8300311)
chr5 (95-183)||(33385401-33385489)
chr5 (95-176)||(10776789-10776870)
chr5 (48-187)||(33169636-33169775)
chr5 (119-183)||(18359119-18359183)
chr5 (77-201)||(26072899-26073023)
chr5 (41-204)||(27165958-27166121)
chr5 (53-87)||(27795466-27795500)
chr5 (71-180)||(18089791-18089900)
[»] chr4 (16 HSPs)
chr4 (13-204)||(7403856-7404047)
chr4 (14-204)||(1828546-1828736)
chr4 (14-200)||(15740165-15740351)
chr4 (14-204)||(19755208-19755401)
chr4 (14-204)||(19784405-19784598)
chr4 (14-204)||(47685901-47686091)
chr4 (14-204)||(13270897-13271087)
chr4 (14-204)||(23642597-23642787)
chr4 (67-204)||(47418801-47418938)
chr4 (95-183)||(45472736-45472824)
chr4 (74-182)||(55725714-55725822)
chr4 (77-204)||(11587204-11587331)
chr4 (95-183)||(12697838-12697926)
chr4 (116-183)||(8361146-8361213)
chr4 (119-182)||(20002774-20002837)
chr4 (52-187)||(46145657-46145792)
[»] chr3 (22 HSPs)
chr3 (14-204)||(34332821-34333011)
chr3 (13-204)||(40930534-40930725)
chr3 (15-204)||(19920235-19920424)
chr3 (14-204)||(2364221-2364411)
chr3 (14-204)||(7312720-7312910)
chr3 (67-204)||(10323577-10323714)
chr3 (28-173)||(7032276-7032421)
chr3 (95-183)||(29523772-29523860)
chr3 (41-188)||(26771011-26771158)
chr3 (95-183)||(11203844-11203932)
chr3 (44-191)||(15312557-15312704)
chr3 (50-187)||(2755822-2755959)
chr3 (43-192)||(17097894-17098043)
chr3 (95-183)||(12342253-12342340)
chr3 (95-183)||(33496572-33496660)
chr3 (119-183)||(35214398-35214462)
chr3 (48-187)||(963186-963325)
chr3 (95-179)||(36801106-36801190)
chr3 (81-172)||(7031055-7031146)
chr3 (125-183)||(19890733-19890791)
chr3 (54-187)||(3140836-3140969)
chr3 (74-195)||(16178952-16179073)
[»] chr8 (17 HSPs)
chr8 (14-204)||(13396332-13396522)
chr8 (14-204)||(41665375-41665565)
chr8 (13-204)||(9922544-9922735)
chr8 (14-204)||(32266508-32266698)
chr8 (14-204)||(7924330-7924520)
chr8 (14-204)||(8299747-8299937)
chr8 (14-204)||(172047-172237)
chr8 (81-183)||(20824307-20824409)
chr8 (14-183)||(13200067-13200236)
chr8 (95-183)||(17699507-17699595)
chr8 (95-183)||(37434157-37434245)
chr8 (117-183)||(2170389-2170455)
chr8 (43-178)||(5181643-5181778)
chr8 (116-183)||(43270496-43270563)
chr8 (42-160)||(34137013-34137131)
chr8 (14-147)||(2529830-2529963)
chr8 (53-87)||(13879610-13879644)
[»] chr2 (8 HSPs)
chr2 (13-189)||(41206959-41207135)
chr2 (14-204)||(4552113-4552303)
chr2 (14-183)||(15917598-15917767)
chr2 (41-178)||(17764994-17765131)
chr2 (14-182)||(12645480-12645648)
chr2 (14-204)||(28252664-28252854)
chr2 (121-183)||(10999978-11000040)
chr2 (95-183)||(14439777-14439865)
[»] chr1 (9 HSPs)
chr1 (14-204)||(51052424-51052614)
chr1 (14-204)||(11909111-11909301)
chr1 (54-204)||(35541033-35541183)
chr1 (14-204)||(6050547-6050737)
chr1 (81-183)||(16917836-16917938)
chr1 (118-183)||(43388415-43388480)
chr1 (14-204)||(47623083-47623271)
chr1 (132-184)||(28351776-28351828)
chr1 (119-183)||(37191237-37191301)
[»] scaffold0472 (1 HSPs)
scaffold0472 (14-204)||(3196-3386)
[»] scaffold0369 (1 HSPs)
scaffold0369 (14-204)||(11211-11401)
[»] scaffold0034 (1 HSPs)
scaffold0034 (14-204)||(105849-106039)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 24767620 - 24767430
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24767620 acatcttcaacgttcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaaccgatccctaa 24767521  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24767520 gaagtcgtcaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactagggctgctcctgtga 24767430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 18651431 - 18651240
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    ||||||||||||  ||||||| ||| | |||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||     
T  18651431 gacatcttcaacggtcccgcatccagagacacacaaccgcgcatccaaaggtaaaatcccacggttttccaaattattttttgtaggtaaccgatccctc 18651332  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  18651331 agaagtcgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatattttgatctaactggggctgctcctgtga 18651240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 2553581 - 2553771
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  | |    
T  2553581 acatcttcaacgttcccacatccagaaacacacaactgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaaccgatctttca 2553680  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||    
T  2553681 aaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatattatggtgtaactggggctgctcttgtga 2553771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 12734069 - 12734240
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| |||||||| || | | ||||||| |||||| |||||| || || |||||||||  || ||||||||  ||||||||||||| ||||||| |    
T  12734069 acatcttcgacattcccacatctagaaacacataaccgctcctccagagatagaatgccacgggttaccaaattaagttttgtaggtaaccgatccctca 12734168  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgta 185  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||| |||||||    
T  12734169 gaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaaatccatattatgatgta 12734240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 21168194 - 21168333
Alignment:
Q  66 aaatgccacgatttgccaaattatttttt-gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaa 164  Q
    |||||||||| |||||||| || |||||| ||||||||  ||||    | ||||| |||||| |||||||| ||||||| |||||||| ||||||| |||    
T  21168194 aaatgccacggtttgccaatttttttttttgtaggtaatcgatcttgcaaaagtctccaagctaggatagatactttgagaggaacctatttatgccaaa 21168293  T
Q  165 ttaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  21168294 ttaactccatattatggtgtaactggggctgctcctgtga 21168333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 15958982 - 15958834
Alignment:
Q  41 acacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactt 140  Q
    ||||||||| || |||||||||| |  || ||| | |||||||||||   ||| |||||||| |||||||| | ||| ||||||||||| ||||||||||    
T  15958982 acacacaactgcacctccaaaggaatgataccatggtttgccaaatttgctttcgtaggtaaatgatccctcaaaagccgccaagcaagaatagagactt 15958883  T
Q  141 tgataggaacctgtttatgcaaaattaactccatattttgatgtaactg 189  Q
    | | |||||||||||||||| | ||||||| ||||||| ||||||||||    
T  15958882 taagaggaacctgtttatgccatattaacttcatatttggatgtaactg 15958834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 17606449 - 17606361
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  17606449 gtaggtaaatgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 17606361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 17579210 - 17579109
Alignment:
Q  81 ccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttg 180  Q
    ||||||||  ||| ||||||||  ||||||| |  |||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||    
T  17579210 ccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttg 17579111  T
Q  181 at 182  Q
    ||    
T  17579110 at 17579109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 17573784 - 17573683
Alignment:
Q  81 ccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttg 180  Q
    ||||||||  ||| ||||||||  ||||||| |  ||||||||||||||||||||  |||| | |||||||||||||||| |||||||||||||||||||    
T  17573784 ccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaatcttttaaaggaacctgtttatgccaaattaactccatattttg 17573685  T
Q  181 at 182  Q
    ||    
T  17573684 at 17573683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 21630226 - 21630134
Alignment:
Q  91 ttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||||||  ||||||| |  ||||||||| |||||||||| ||||| | ||||||||| |||||| ||||||||||||||||||||||    
T  21630226 ttttgtaggtaaacgatccctcaatagtcgccaaacaaggatagaaacttttaaaggaacctggttatgccaaattaactccatattttgatg 21630134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 10577364 - 10577276
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||||||| | ||||| | |||||||||||||||| |||||||||| |||||||||||    
T  10577364 gtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactctatattttgatg 10577276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 20883202 - 20883060
Alignment:
Q  41 acacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactt 140  Q
    ||||| ||||| ||||||| || || ||||||||||| | |||| ||   ||| ||||||||   |||||| |  || ||||||||||||||||| ||||    
T  20883202 acacaaaaccgagcctccacagatataatgccacgatctaccaagttcgatttagtaggtaaacaatccctcaacagccgccaagcaaggatagaaactt 20883103  T
Q  141 tgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    | | |||||||| ||||||| | ||||||||||||||||||||    
T  20883102 ttaaaggaacctatttatgccagattaactccatattttgatg 20883060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 13937678 - 13937817
Alignment:
Q  48 accgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgatagg 147  Q
    ||||| ||||||||| ||| |  |||| | |||||||||| | ||| ||||||||| | ||||| || |  ||||||||||  ||||| ||||| | |||    
T  13937678 accgctcctccaaagataagaccccacaacttgccaaattttgtttagtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaagg 13937777  T
Q  148 aacctgtttatgcaaaattaactccatattttgatgtaac 187  Q
     |||||||| ||| |||| |||||||||||||||||||||    
T  13937778 cacctgtttgtgccaaatcaactccatattttgatgtaac 13937817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 47876927 - 47877117
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  47876927 acatcttcaacgttcccgcatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaactgatctctca 47877026  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  47877027 gaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccctattttgatgtaactggggctgctcctgtga 47877117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 235635 - 235443
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattatttttt--gtaggtaactgatccct 111  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||  ||||||||| |||||||    
T  235635 acatcttcaacgttctcgcaaccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaatgattttttttgtaggtaaccgatccct 235536  T
Q  112 aagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  235535 cagaagtcgccaagcaaggatagagactttgagatgaacctgtttatgccaaattaactccatattttgatgtaactggggctgctcctgtga 235443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 11277448 - 11277258
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| || |    
T  11277448 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattatttttcgtaggtaaccgatctctca 11277349  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||    
T  11277348 aaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatattatggtgtaactggggttgctcctgtga 11277258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 37919488 - 37919678
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||| || |    
T  37919488 acatcttcaacgttcccacaactagaaacacacaaccgcgcctccaaaggtaaaatgcaacggtttgccaaattattttttgtaggtaaccaatctctca 37919587  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | |||||||||||||||||||| ||||||| |||||||||||||| | ||||||||| |||||  |||||||| |||||||||||||||||    
T  37919588 ggagtcgccaagcaaggatagatactttgagaggaacctgtttataccaaattaacttcatatgatgatgtaattggggctgctcctgtga 37919678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 17720579 - 17720769
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||  ||||||| |||| | ||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |    
T  17720579 acatcttcttcattcccacaactagaaacacacatccgcgcctccagaggtaaaatgccacggtttgccaaattatcttttgtaggtaaccgatccctca 17720678  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||| ||||||||||| ||||||| |||||||||| ||||| ||||||||||||  ||||||||||| || ||||||||||||||    
T  17720679 gaagtcgccatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaactccaagttttgatgtaagtgaggctgctcctgtga 17720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 29967919 - 29968109
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||||||| |||| || |    
T  29967919 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccatggtttgccaaattacttttcgtaggtaaccgatctctca 29968018  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     |||||  |||||||||||||| ||||||| |||||||||||||||| |||||||||||||| | || ||||||||||| |||||||||||    
T  29968019 aaagtcctcaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatactatggtgtaactggggttgctcctgtga 29968109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 4938324 - 4938134
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  4938324 acatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 4938225  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  4938224 ttagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtccacattatggtgtaactggggctgctcctgtga 4938134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 18532653 - 18532741
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||||||| | ||||| | |||||||||||||||| | ||||||||||||||||||||    
T  18532653 gtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgcgagattaactccatattttgatg 18532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 25619508 - 25619572
Alignment:
Q  119 cgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||||||||||| ||||| | |||||||||||||||| | ||||||||||||||||||||    
T  25619508 cgccaagcaaggatagaaacttttaaaggaacctgtttatgccatattaactccatattttgatg 25619572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 37254807 - 37254871
Alignment:
Q  119 cgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    |||||||||||||| || ||||| | || ||||||||||||| | ||||||||||||||||||||    
T  37254807 cgccaagcaaggattgaaacttttaaagtaacctgtttatgccagattaactccatattttgatg 37254871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 28535872 - 28535681
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    ||||||||| |||||||| |||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||     
T  28535872 gacatcttctacattcccacaaccagaaacacacatctgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaaccgatccctc 28535773  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  28535772 agaagtcgccaagcaaggatagaaactttgagaggaacctgtgtatgccaaattaactccatgttttgatgtaactgaggctgctcctgtga 28535681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 35983988 - 35983797
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||| |||     
T  35983988 gacaacttctacattcccacaaccaaaaacacacaaccgcgcctccaaaggtaaaatgtcatggtttgccaaattattttttgtaggtaaccgattcctc 35983889  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||||||||||||| ||||||| |||||||||| || || ||||||||||||| |||||||||||||| ||||||||||||||    
T  35983888 agaagtcgccaagcaaggatagatactttgagaggaacctgtgtaagccaaattaactccatgttttgatgtaactgaggctgctcctgtga 35983797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 42928074 - 42928262
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    |||||||||||| |||||||| ||| | |||||||||||| ||||||| |||||||||||||  |||| ||||||||||||||||| |||| |||||||     
T  42928074 gacatcttcaacgttcccgcatccagagacacacaaccgcacctccaagggtaaaatgccacagtttgtcaaattattttttgtagttaaccgatccctc 42928173  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctg 201  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||    
T  42928174 agaagccgccaaacaaggatagagactttgagaggaacctgtttataccaaattaactccatatttggatgtaactggggctgttcctg 42928262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 23238328 - 23238518
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| |||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||||||||| |||| || |    
T  23238328 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaagctaaaatgccacggtttgccaaattacttttcgtaggtaaccgatctctca 23238427  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||||| ||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||| || ||||||||||| |||||||||||    
T  23238428 aaagtctccaagcaaggatagaaactttgagaggaacctatttatgccaaattaactccatattatggtgtaactggggttgctcctgtga 23238518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 30732510 - 30732320
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || ||| ||||||| |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  30732510 acatcttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 30732411  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  30732410 gaagtcgccaagcaaagatagatactttgagaggaacctgtttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 30732320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 12825143 - 12825333
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || ||| ||||||| |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  12825143 acatcttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 12825242  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||||||||||||| | ||||||| |||||| ||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  12825243 gaagtcgccaagcaaggatacatactttgagaggaacttgtttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 12825333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 8227970 - 8228148
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||| | || ||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||| |||| || |    
T  8227970 acatcttcaacgttctcacatccagaaacacacaaccgcgcctccaaaggtaaaatgtcacggtttgccaaattacttttcgtaggtaaccgatctctca 8228069  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactgggg 192  Q
     ||||| ||||||||||||||| ||||||| |||||||||||||||  |||||||||||||||| || |||||||||||    
T  8228070 aaagtctccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaactccatattatggtgtaactgggg 8228148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 27117357 - 27117167
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| |||||||| || ||| ||||||| |||||| |||||| || || ||||||||| ||| ||||||||  |||||| |||||| | ||||| |    
T  27117357 acatcttcgacattcccacagccagaaacacataaccgctcctccatagatagaatgccacggtttaccaaattaagttttgtgggtaaccggtccctca 27117258  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||| || |||||||||  ||||||||||||    
T  27117257 gaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccatattatggtgtaactggatctgctcctgtga 27117167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 42513664 - 42513854
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || |||| |||||||||||||||||  ||||||||||||| ||||||| |    
T  42513664 acatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgtcacgatttgccaaattaagttttgtaggtaaccgatccctca 42513763  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  42513764 ttagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtccacattatggtgtaactggggctgctcctgtga 42513854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 19255320 - 19255154
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgc-ctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccct 111  Q
    |||||||||||| | |||||| |||   |||||||||||||| |||||| || | |||||||| |||||||||||||||||||||||||||| |||||||    
T  19255320 gacatcttcaacgtgcccgcatccagtgacacacaaccgcgcgctccaagggaataatgccacaatttgccaaattattttttgtaggtaaccgatccct 19255221  T
Q  112 aagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattt 178  Q
     ||||  ||||||||||||||||| ||||||| || || |||||||||| |||||||||||||||||    
T  19255220 cagaaaccgccaagcaaggatagatactttgagagaaatctgtttatgccaaattaactccatattt 19255154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 31641513 - 31641645
Alignment:
Q  71 ccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaact 170  Q
    ||||| ||||||||||||||||||||||||||| ||||||| || |||| ||| ||||||||||| ||||| | |||||||||| ||||| |||||||||    
T  31641513 ccacggtttgccaaattattttttgtaggtaaccgatccctcagtagtctccatgcaaggatagaaacttt-agaggaacctgtgtatgccaaattaact 31641611  T
Q  171 ccatattttgatgtaactggggctgctcctgtga 204  Q
    |||| ||||||||||| || ||||||||||||||    
T  31641612 ccatgttttgatgtaagtgaggctgctcctgtga 31641645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 25857553 - 25857451
Alignment:
Q  81 ccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttg 180  Q
    ||||||||  ||| ||||||||  ||||||| |  |||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||    
T  25857553 ccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttg 25857454  T
Q  181 atg 183  Q
    |||    
T  25857453 atg 25857451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 27767063 - 27767155
Alignment:
Q  91 ttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||||||  ||||||| |  |||||||||||||||||| | ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  27767063 ttttgtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 27767155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 12820146 - 12820035
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    ||||||||| ||| |||| || ||| ||||||| |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| |||||||     
T  12820146 gacatcttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctc 12820047  T
Q  113 agaagtcgccaa 124  Q
    | ||||||||||    
T  12820046 ataagtcgccaa 12820035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 8300311 - 8300209
Alignment:
Q  81 ccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttg 180  Q
    ||||||||  ||| ||||||||  ||||||| |  ||||||||| |||||||||| ||||| | |||||||||||||||| |||||||||||||||||||    
T  8300311 ccaaattagatttagtaggtaagcgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttg 8300212  T
Q  181 atg 183  Q
    |||    
T  8300211 atg 8300209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 33385489 - 33385401
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||||||||| ||||| |  ||||||||||||||| ||||||||||||||||||||||    
T  33385489 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatg 33385401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 10776789 - 10776870
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatat 176  Q
    ||||||||  ||||||| || |||||||||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||    
T  10776789 gtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatat 10776870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 33169636 - 33169775
Alignment:
Q  48 accgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgatagg 147  Q
    ||||| ||||||||| ||| |  |||||| |||||||||| | ||| ||||||||| | ||||| || |  ||||||||||  ||||| ||||| | |||    
T  33169636 accgctcctccaaagataagaccccacgacttgccaaattttgtttagtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaagg 33169735  T
Q  148 aacctgtttatgcaaaattaactccatattttgatgtaac 187  Q
     |||||||| ||| |||| |||||||||||||||||||||    
T  33169736 cacctgtttgtgccaaatcaactccatattttgatgtaac 33169775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 18359183 - 18359119
Alignment:
Q  119 cgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    |||||||||||||| || ||||| | |||||||||||||||| | ||||||||||||||||||||    
T  18359183 cgccaagcaaggattgaaacttttaaaggaacctgtttatgctagattaactccatattttgatg 18359119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 26072899 - 26073023
Alignment:
Q  77 tttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatat 176  Q
    |||||||| || | ||| ||||||||  ||||||| |  ||||||||| ||| ||||| |||||| | |||||| | ||||||| |||||||||||| ||    
T  26072899 tttgccaatttctctttagtaggtaatcgatccctcaacagtcgccaaacaaagatagggactttcaaaggaacatatttatgccaaattaactccaaat 26072998  T
Q  177 tttgatgtaactggggctgctcctg 201  Q
    ||||||| || |||||||| |||||    
T  26072999 tttgatgcaaatggggctgttcctg 26073023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 27166121 - 27165958
Alignment:
Q  41 acacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactt 140  Q
    ||||||||| |||| |||||||| | ||| |||||| ||||||||||   |||| |||||||  ||||| | ||   ||||||| | | |||||||||||    
T  27166121 acacacaactgcgcttccaaaggaagaattccacgacttgccaaatttgcttttataggtaaacgatccttcagcgttcgccaaacgaagatagagactt 27166022  T
Q  141 tgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | | ||| |||||||  ||| ||||||| ||||||||||||||||| | ||| || ||||||||    
T  27166021 ttagaggtacctgttggtgccaaattaattccatattttgatgtaaattgggttgttcctgtga 27165958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 27795466 - 27795500
Alignment:
Q  53 gcctccaaaggtaaaatgccacgatttgccaaatt 87  Q
    |||||||| ||||||||||||||||||||||||||    
T  27795466 gcctccaacggtaaaatgccacgatttgccaaatt 27795500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 18089900 - 18089791
Alignment:
Q  71 ccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaact 170  Q
    ||||||||||||||||| |   | ||||||||  |||| || |  ||||| ||||||| |||||||||||| |  || |||||||| ||| |||||||||    
T  18089900 ccacgatttgccaaattttgcctagtaggtaaacgatctctcaatagtcgtcaagcaaagatagagactttcaacggtacctgtttgtgccaaattaact 18089801  T
Q  171 ccatattttg 180  Q
    ||| ||||||    
T  18089800 ccaaattttg 18089791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 7403856 - 7404047
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    |||||||||||| |||||||| ||| | ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| |||||||     
T  7403856 gacatcttcaacgttcccgcatccagagacacacaaccgcgcctccaaacgtaaaatgccacggtttgccaaattcttttttgtaggtaaccgatccctc 7403955  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  7403956 agaagtcgccaagcaaggatagagactttgaaatgaacttgtttatgccaaattaacttcatattttgatgtaactggggctgctcctgtga 7404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 1828736 - 1828546
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||| |  |    
T  1828736 acatcttcaacattcccacacccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattagtttttgtaggtaacctatctcgca 1828637  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  1828636 atagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatattatgatgtaactggggctgctcctgtga 1828546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 15740165 - 15740351
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||| |||| |  |    
T  15740165 acatctttaacattcccacacccagaaacacacaaccgcgcctccaaaggtaaaatgccacggcttgtcaaattattttttgtaggtaaccgatctcgca 15740264  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcct 200  Q
     ||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  15740265 aaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatattatggtgtaactggggctgctcct 15740351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 19755208 - 19755401
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaa---aatgccacgatttgccaaattattttttgtaggtaactgatccc 110  Q
    |||||||||||  |||| || ||| ||||||||||||||||||||||||||||   |||| |||| ||||||||||||||||||||||||||| |||| |    
T  19755208 acatcttcaacgctcccacatccagaaacacacaaccgcgcctccaaaggtaataaaatgtcacggtttgccaaattattttttgtaggtaaccgatctc 19755307  T
Q  111 taagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | || |||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||  ||||| || ||||||||||| |||||    
T  19755308 tcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatgatgatgaaattggggctgctcttgtga 19755401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 19784598 - 19784405
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaa---aatgccacgatttgccaaattattttttgtaggtaactgatccc 110  Q
    |||||||||||  |||| || ||| ||||||||||||||||||||||||||||   |||| |||| ||||||||||||||||||||||||||| |||| |    
T  19784598 acatcttcaacgctcccacatccagaaacacacaaccgcgcctccaaaggtaataaaatgtcacggtttgccaaattattttttgtaggtaaccgatctc 19784499  T
Q  111 taagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | || |||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||  ||||| || ||||||||||| |||||    
T  19784498 tcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatgatgatgaaattggggctgctcttgtga 19784405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 47686091 - 47685901
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| |||||||| || ||| ||||||| |||||| |||||| || |||||||||||| ||||||||||||| ||||||||||||| |||| || |    
T  47686091 acatcttcgacattcccacatccagaaacacataaccgctcctccacagataaaatgccacggtttgccaaattatgttttgtaggtaaccgatctctca 47685992  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||||||||||||||||||||| ||||||| |||||||||||||||  ||||||| |||| ||| || ||||||| ||||||||| |||||    
T  47685991 aaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaagtccagattatggtgtaacttgggctgctcttgtga 47685901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 13271087 - 13270897
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  13271087 acatcttcgacaatcccacatccagtaactcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 13270988  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  13270987 ttagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtccacattatggtgtaactggggctgctcctgtga 13270897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 23642787 - 23642597
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  23642787 acatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 23642688  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  23642687 ttagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtccacattatggtgtaactggggctgctcctgtga 23642597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 67 - 204
Target Start/End: Original strand, 47418801 - 47418938
Alignment:
Q  67 aatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaatt 166  Q
    |||||||||| |||||||||||  ||||||||||||| ||||||| || |||||||||||||||||||| ||||||| ||| |||||||||||| |||||    
T  47418801 aatgccacgagttgccaaattaagttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaatt 47418900  T
Q  167 aactccatattttgatgtaactggggctgctcctgtga 204  Q
    || |||||| | || |||||||||||||||||||||||    
T  47418901 aagtccatactatggtgtaactggggctgctcctgtga 47418938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 45472824 - 45472736
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  ||||||||| |||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  45472824 gtaggtaaacgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 45472736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 55725822 - 55725714
Alignment:
Q  74 cgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactcca 173  Q
    |||| ||||||||| | ||||||||||||  ||||||| |  || |||||||||||||| || ||||| | |||||| ||||||||| ||||||||||||    
T  55725822 cgatctgccaaattgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagaggaacttgtttatgccaaattaactcca 55725723  T
Q  174 tattttgat 182  Q
    |||||||||    
T  55725722 tattttgat 55725714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 11587331 - 11587204
Alignment:
Q  77 tttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatat 176  Q
    ||||||||||| | ||| ||||||||  ||| ||| ||||| ||||||||||| ||||| ||||||||||| | || ||||||| ||||||||||||||     
T  11587331 tttgccaaattttctttcgtaggtaaacgattcctcagaagccgccaagcaagaatagatactttgataggtatctatttatgccaaattaactccatag 11587232  T
Q  177 tttgatgtaactggggctgctcctgtga 204  Q
     | |||| ||||| ||||| ||||||||    
T  11587231 atggatgcaactgaggctgttcctgtga 11587204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 12697838 - 12697926
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||||||||| ||||| | |||||||||||||||| ||||||| | ||||||||||||    
T  12697838 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaatttcatattttgatg 12697926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 8361146 - 8361213
Alignment:
Q  116 agtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||| |||||||||| ||||| |  ||||||||||||||| ||||||||||||||||||||||    
T  8361146 agtcgccaaacaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatg 8361213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 20002774 - 20002837
Alignment:
Q  119 cgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgat 182  Q
    |||||||||| |||||| ||||| | | |||||||||||||| |||||||||||||||||||||    
T  20002774 cgccaagcaatgatagaaacttttaaaagaacctgtttatgccaaattaactccatattttgat 20002837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 46145657 - 46145792
Alignment:
Q  52 cgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacc 151  Q
    ||||||||||| ||| |  |||||| |||||||||| | ||| ||||||||  | ||||| || |  ||||||||||  ||||| ||||| | ||| |||    
T  46145657 cgcctccaaagataagaccccacgacttgccaaattttgtttagtaggtaatcggtccctcagcaagcgccaagcaaaaatagacactttcaaaggcacc 46145756  T
Q  152 tgtttatgcaaaattaactccatattttgatgtaac 187  Q
    | ||| ||| |||| |||||||||||||||||||||    
T  46145757 tatttgtgccaaatcaactccatattttgatgtaac 46145792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 1e-70; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 34333011 - 34332821
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| || |    
T  34333011 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaatcgatctctca 34332912  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  34332911 gaagttgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatattatgatgtaactggggctgctcctgtga 34332821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 40930725 - 40930534
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    ||||||||| || ||||| |||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||  ||||||     
T  40930725 gacatcttcgacgttcccacaaccagaaacacacaaccgcgcctccaaaggtaaaaggccacggtttgccaaattattttttgtaggtaaccaatccctc 40930626  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | ||||||||||||||||||||| ||||||| |||||||||||||||  ||| ||||||||| |||||||| ||||| || |||||||||||    
T  40930625 aaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaactaactccatgttttgatgcaactgaggttgctcctgtga 40930534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 19920424 - 19920235
Alignment:
Q  15 catcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaag 114  Q
    ||||||| |||||||| || ||| ||||||| |||||| |||||| || || |||||| |||||| ||||||||  ||||||||||||| ||||||| ||    
T  19920424 catcttcgacattcccacatccagaaacacataaccgctcctccacagatagaatgcctcgatttaccaaattaagttttgtaggtaaccgatccctcag 19920325  T
Q  115 aagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||  || ||||||||||||| |||||||||    
T  19920324 aagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccatatgatggtgtaactggggcttctcctgtga 19920235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 2364221 - 2364411
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  2364221 acatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 2364320  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | |||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  2364321 gtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 2364411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 7312720 - 7312910
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || ||| ||||||| | |||| |||||| ||  | ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  7312720 acatcttcgacaatcccacatccagaaacacaaagccgctcctccacagacagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 7312819  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  7312820 ttagtcgccaagcaaggatagatactttgagaggtacctgtttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 7312910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 10323714 - 10323577
Alignment:
Q  67 aatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaatt 166  Q
    |||||||||| |||||||||||  ||||||||||||| ||||||| || |||||||||||||||||||| ||||||| ||| |||||||||||| |||||    
T  10323714 aatgccacgagttgccaaattaagttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaatt 10323615  T
Q  167 aactccatattttgatgtaactggggctgctcctgtga 204  Q
    || |||||| | || |||||||||||||||||||||||    
T  10323614 aagtccatactatggtgtaactggggctgctcctgtga 10323577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 7032276 - 7032421
Alignment:
Q  28 cccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagca 127  Q
    |||||||||  | |||||| ||||||| |||||||||||||  |||| ||| |||| ||| ||||||||||||||| ||||||| ||||||||||| |||    
T  7032276 cccgcaacctgagacacacgaccgcgcatccaaaggtaaaagaccacaattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgca 7032375  T
Q  128 aggatagagactttgataggaacctgtttatgcaaaattaactcca 173  Q
    |||||||| | ||||| |||||||||||| ||| |||  |||||||    
T  7032376 aggatagaaattttgagaggaacctgtttgtgccaaaccaactcca 7032421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 29523860 - 29523772
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  29523860 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 29523772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 26771158 - 26771011
Alignment:
Q  41 acacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactt 140  Q
    ||||||||| || |||||||||| |  || ||||| |||||||||||   ||| ||||||||  ||||||| | ||| ||||||| ||| ||||||||||    
T  26771158 acacacaactgcacctccaaaggaatgataccacggtttgccaaatttgctttcgtaggtaaacgatccctcaaaagccgccaagtaagaatagagactt 26771059  T
Q  141 tgataggaacctgtttatgcaaaattaactccatattttgatgtaact 188  Q
    | | |||| ||||||||||| | ||||||||||||||| |||||||||    
T  26771058 taagaggagcctgtttatgccacattaactccatatttggatgtaact 26771011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 11203844 - 11203932
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||| ||||| ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  11203844 gtaggtaaacgatccctcaacagtcgccaagcaagtatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 11203932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 15312557 - 15312704
Alignment:
Q  44 cacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttga 143  Q
    ||||||||||||||||  |||| ||| ||||||||| ||||||| | |||  |||| ||  ||| ||| || |||| ||||||||  ||| ||||||| |    
T  15312557 cacaaccgcgcctccattggtataatcccacgattttccaaattctctttaataggcaaacgattcctcagcagtcaccaagcaaatatatagactttta 15312656  T
Q  144 taggaacctgtttatgcaaaattaactccatattttgatgtaactggg 191  Q
     ||| |||||||||||| |||||||||||| |||||||||||| ||||    
T  15312657 gaggtacctgtttatgccaaattaactccaaattttgatgtaaatggg 15312704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 2755822 - 2755959
Alignment:
Q  50 cgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaa 149  Q
    ||||||||||||| ||| |  |||||| |||||||||| | ||| ||||||||| | ||||| || |  ||||||||||  ||||| ||||| | ||| |    
T  2755822 cgcgcctccaaagataagaccccacgacttgccaaattttatttagtaggtaaccggtccctcagcaaacgccaagcaaatatagacactttcaaaggta 2755921  T
Q  150 cctgtttatgcaaaattaactccatattttgatgtaac 187  Q
    ||||||| ||| |||| |||||||||||||||||||||    
T  2755922 cctgtttgtgccaaatcaactccatattttgatgtaac 2755959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 192
Target Start/End: Complemental strand, 17098043 - 17097894
Alignment:
Q  43 acacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttg 142  Q
    ||||||||| ||||||| ||  | ||| ||||| ||||||||||| | ||| ||||||||| ||||| | |  |||||| |||||| ||||||||||||     
T  17098043 acacaaccgtgcctccatagaaataatcccacggtttgccaaattttctttagtaggtaaccgatccatcaacagtcgctaagcaaagatagagactttc 17097944  T
Q  143 ataggaacctgtttatgcaaaattaactccatattttgatgtaactgggg 192  Q
    | |    ||||||||||| |||||||||||| |||||||||||| |||||    
T  17097943 acatatgcctgtttatgccaaattaactccacattttgatgtaaatgggg 17097894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 12342340 - 12342253
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||||||||| ||||| | || ||||||||||||| ||||||||||||||||||||||    
T  12342340 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaag-aacctgtttatgccaaattaactccatattttgatg 12342253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 33496572 - 33496660
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  ||||||||||||| |||||| ||||| | |||||||||||||||| ||||||||||||||| ||||||    
T  33496572 gtaggtaaacgatccctcaacagtcgccaagcaatgatagaaacttttaaaggaacctgtttatgccaaattaactccatatattgatg 33496660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 35214462 - 35214398
Alignment:
Q  119 cgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    |||||| |||||||||| ||||| | |||||||||||||||| | ||||||||||||||||||||    
T  35214462 cgccaaacaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatg 35214398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 963325 - 963186
Alignment:
Q  48 accgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgatagg 147  Q
    ||||| ||||||||| ||| |  |||| | |||||||||| | ||| ||||||||| | ||||| || |  ||||||||||  ||||| ||||| | |||    
T  963325 accgctcctccaaagataagaccccacaacttgccaaattttgtttagtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaagg 963226  T
Q  148 aacctgtttatgcaaaattaactccatattttgatgtaac 187  Q
     |||||||| ||| |||| |||||||||||||||||||||    
T  963225 cacctgtttgtgccaaatcaactccatattttgatgtaac 963186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 36801190 - 36801106
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatatttt 179  Q
    ||||||||  ||||||| || ||| |||||||||||||| | ||||| |  ||||||| ||||||| ||||||||||||||||||    
T  36801190 gtaggtaaacgatccctcagcagttgccaagcaaggatataaacttttaagggaacctatttatgctaaattaactccatatttt 36801106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 7031146 - 7031055
Alignment:
Q  81 ccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactcc 172  Q
    ||||||||  ||| ||||||||  ||||||| |  || ||||||||||||||||| | ||| | |||||||||||||||| |||||||||||    
T  7031146 ccaaattagatttagtaggtaagcgatccctcaacagacgccaagcaaggatagaaagttttaaaggaacctgtttatgccaaattaactcc 7031055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 19890733 - 19890791
Alignment:
Q  125 gcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    |||||||| || ||||| | |||||||||||||||| | ||||||||||||||||||||    
T  19890733 gcaaggatggaaacttttaaaggaacctgtttatgccagattaactccatattttgatg 19890791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 3140836 - 3140969
Alignment:
Q  54 cctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctg 153  Q
    ||||||||| ||| |  |||||| |||||||||| | ||| ||||||||| | ||||| || |   |||||||||  ||||| ||||| | ||| |||||    
T  3140836 cctccaaagataagaccccacgacttgccaaattttgtttagtaggtaaccggtccctcagtaaatgccaagcaaatatagacactttcaaaggcacctg 3140935  T
Q  154 tttatgcaaaattaactccatattttgatgtaac 187  Q
    ||| | | |||| |||||||||||||||||||||    
T  3140936 tttgtaccaaatcaactccatattttgatgtaac 3140969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 16178952 - 16179073
Alignment:
Q  74 cgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactcca 173  Q
    |||||||||||||| | ||| |||||||   ||||| | |  || ||||| ||||  ||||| ||||| | ||| |||||||||||| |||||||||| |    
T  16178952 cgatttgccaaattctctttagtaggtagacgatccttcatcaggcgccacgcaaaaatagatactttaagaggtacctgtttatgccaaattaactcta 16179051  T
Q  174 tattttgatgtaactggggctg 195  Q
     ||||||| |||| ||||||||    
T  16179052 aattttgacgtaaatggggctg 16179073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 13396332 - 13396522
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |    
T  13396332 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaaccgatctctca 13396431  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | |||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||  |||||||| |||||||||||||||||    
T  13396432 ggagtcgccaagcaaggatagatactttgagaggaacttgtttatgccaaattaactccatatgatgatgtaattggggctgctcctgtga 13396522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 41665565 - 41665375
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| || |    
T  41665565 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgtcatggtttgccaaattattttttgtaggtaactgatctctta 41665466  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | | |||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||  |||||||| |||||||||||||||||    
T  41665465 ggaatcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatgatgatgtaattggggctgctcctgtga 41665375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 9922544 - 9922735
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    ||||||||| |||||||| |||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||     
T  9922544 gacatcttctacattcccacaaccagaaacacacatccgcgcctccagaggtaaaatgccacggtttgccaaattatcttttgtaggtaaccgatccctc 9922643  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||| || ||||||||||| ||||||| |||||||||| ||||| ||||||||||||  ||||||||||| || ||||||||||||||    
T  9922644 agaagtcgtcatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaactccaagttttgatgtaagtgaggctgctcctgtga 9922735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 32266508 - 32266698
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||| || |    
T  32266508 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattacttttcgtaggtaaccgatctctca 32266607  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||| || |||||||| || ||||| |||||    
T  32266608 aaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccaaattatggtgtaactgtggttgctcttgtga 32266698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 7924330 - 7924520
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  7924330 acatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 7924429  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  7924430 ttagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtccacattatggtgtaactggggctgctcctgtga 7924520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 8299747 - 8299937
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  |||||| || ||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  8299747 acatcttcgacaatcccacatccagcaacacataatcgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 8299846  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    | |||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| |||| ||| || ||||| ||||||| |||||||||    
T  8299847 gtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccaaattatggtgtaattggggctactcctgtga 8299937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 172047 - 172237
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||||| || || ||| ||||||| |||||| |||||| || || |||| |||| ||| ||||||||  |||||| |||||| | ||||| |    
T  172047 acatcttcgacattaccacagccagaaacacataaccgctcctccatagatagaatgtcacggtttaccaaattaagttttgtgggtaaccggtccctca 172146  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||| || || |||||||||  ||||||||||||    
T  172147 gaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccattttatggtgtaactggttctgctcctgtga 172237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 20824307 - 20824409
Alignment:
Q  81 ccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttg 180  Q
    ||||||||  ||| ||||||||  ||||||| |  |||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||    
T  20824307 ccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttg 20824406  T
Q  181 atg 183  Q
    |||    
T  20824407 atg 20824409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 13200067 - 13200236
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||||| ||| || |||  |||||| ||||| ||||||| ||||| ||| |  || | ||||||||| | ||||||||||||  ||||||| |    
T  13200067 acatcttcaacatgcccacacccagtaacacaaaaccgagcctccataggtagaattctgcgctctgccaaattgtattttgtaggtaaacgatccctca 13200166  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
      ||  ||||||||||||| || ||||| | |||||||||||||||| ||| ||||||||||||||||||    
T  13200167 atagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 13200236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 17699507 - 17699595
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| || |||||||||||||||||||| ||||| |  ||||||||||||||| ||||||||||||||||||||||    
T  17699507 gtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatg 17699595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 37434157 - 37434245
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  |||||||||||||| ||||||||||| | |||||| ||||||||| ||||||||||||||||||||||    
T  37434157 gtaggtaaacgatccctcaacagtcgccaagcaagaatagagacttttaaaggaacatgtttatgccaaattaactccatattttgatg 37434245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 2170389 - 2170455
Alignment:
Q  117 gtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||||||||||||| ||||| | |||||||||||||||| | ||||||||||||||||||||    
T  2170389 gtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatg 2170455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 5181643 - 5181778
Alignment:
Q  43 acacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttg 142  Q
    ||||||||||||||||||||| |  |  | ||| |||  |||||||| |||||| ||||| |||||||| ||  | |||||| |||| ||| |||||||     
T  5181643 acacaaccgcgcctccaaaggaatgactcgacggtttatcaaattatcttttgttggtaaatgatccctcagccgccgccaaacaagaatatagactttt 5181742  T
Q  143 ataggaacctgtttatgcaaaattaactccatattt 178  Q
    | ||| |||||||||||| |||||| ||||||||||    
T  5181743 agaggcacctgtttatgccaaattatctccatattt 5181778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 43270496 - 43270563
Alignment:
Q  116 agtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    |||||||||| ||||||||| ||||| | |||||||||||||||| | || |||||||||||||||||    
T  43270496 agtcgccaagtaaggatagaaacttttaaaggaacctgtttatgccagatgaactccatattttgatg 43270563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 34137131 - 34137013
Alignment:
Q  42 cacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagacttt 141  Q
    ||||||||||| |||||| ||| |  || || || ||||||||||| | ||| ||||||||  ||||| | | ||| ||||||||||| |||||||||||    
T  34137131 cacacaaccgcccctccacaggaatgataccgcggtttgccaaattttctttcgtaggtaaacgatccatcataagccgccaagcaagaatagagacttt 34137032  T
Q  142 gataggaacctgtttatgc 160  Q
    || ||| ||||||||||||    
T  34137031 gagaggtacctgtttatgc 34137013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 2529830 - 2529963
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||||| ||| || ||   |||||| ||||| ||||||||| ||| ||| ||||||| | ||||||| | ||||||||||||  ||||||| |    
T  2529830 acatcttcaacatgcccacaccctgtaacacaaaaccgagcctccaaaagtagaattccacgatctaccaaattgtattttgtaggtaagcgatccctca 2529929  T
Q  114 gaagtcgccaagcaaggatagagactttgatagg 147  Q
      || |||||||||||||| || |||||| ||||    
T  2529930 atagccgccaagcaaggattgaaactttggtagg 2529963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 13879644 - 13879610
Alignment:
Q  53 gcctccaaaggtaaaatgccacgatttgccaaatt 87  Q
    |||||||| ||||||||||||||||||||||||||    
T  13879644 gcctccaacggtaaaatgccacgatttgccaaatt 13879610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 8e-60; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 41206959 - 41207135
Alignment:
Q  13 gacatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatcccta 112  Q
    |||||||||||| | |||||| |||   |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||     
T  41206959 gacatcttcaacgtgcccgcatccagtgacacacaaccgcgcctccaagggaataatgccacgatttgccaaattattttttgtaggtaaccgatccctc 41207058  T
Q  113 agaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactg 189  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  41207059 agaagccgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatatttggatgtaactg 41207135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 4552113 - 4552303
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||| ||| ||| |||| || ||| ||||||| |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  4552113 acattttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 4552212  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||||||||||||||| ||||| | |||||||| ||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  4552213 gaagtcgccaagcaaggatagatactttaagaggaacctatttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 4552303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 15917598 - 15917767
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||||| ||| ||||||   |||||||||||| | |||||||| | ||| ||||||||||||||||||  ||||||||||||  ||||||| |    
T  15917598 acatcttcaacatgcccacaaccagtgacacacaaccgcacttccaaaggaataataccacgatttgccaaattaacttttgtaggtaaacgatccctca 15917697  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    | |||| ||||||||||||| ||||||| | |||||||| ||||||| |||||||||| |||||||||||    
T  15917698 gcagtccccaagcaaggatacagactttcagaggaacctatttatgcgaaattaactcaatattttgatg 15917767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 17765131 - 17764994
Alignment:
Q  41 acacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactt 140  Q
    ||||||||||||||||||||||| |  || ||||| |||||||||||   ||| |||||||| |||||||| |  || ||||||||||| ||||||||||    
T  17765131 acacacaaccgcgcctccaaaggaatgataccacggtttgccaaatttgctttcgtaggtaaatgatccctcaatagccgccaagcaagaatagagactt 17765032  T
Q  141 tgataggaacctgtttatgcaaaattaactccatattt 178  Q
    | | |||| ||||||||||| | |||||||||||||||    
T  17765031 taagaggagcctgtttatgccatattaactccatattt 17764994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 12645480 - 12645648
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||||| ||| || ||   |||||| ||||| ||||||||||||| ||| |  |||| || |||||| | ||||||||||||  ||||||| |    
T  12645480 acatcttcaacatgcccacaccctgtaacacaaaaccgagcctccaaaggtagaattctgcgatctgtcaaattgtattttgtaggtaagcgatccctca 12645579  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgat 182  Q
      || |||||||||||||| || ||||| | || ||||||||||||| |||||||||||||||||||||    
T  12645580 atagccgccaagcaaggattgaaacttttagagaaacctgtttatgccaaattaactccatattttgat 12645648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 28252664 - 28252854
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||| |||  || |||||  ||||||| |||||| |||||| | | | ||||||| | |||||||||||    || ||||||||  ||||||| |    
T  28252664 acatcttcatcatgaccacaaccggaaacacataaccgcccctccatatgaataatgccatggtttgccaaatttcccttcgtaggtaagcgatccctca 28252763  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||| ||||||||||| ||||| ||||| | ||| |||||||||||| ||||||| ||||||  |  ||||||||| ||||| ||||||||    
T  28252764 aaagccgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaattccatagatgaatgtaactgaggctgttcctgtga 28252854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 11000040 - 10999978
Alignment:
Q  121 ccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||||||||| ||||| | || ||||||||||||  | ||||||||||||||||||||    
T  11000040 ccaagcaaggatagaaacttttaaagaaacctgtttatggcagattaactccatattttgatg 10999978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 14439777 - 14439865
Alignment:
Q  95 gtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||  ||||||| |  ||||| ||||| | |||||| ||||| | |||||||||||||||| | |||||||||||| |||||||    
T  14439777 gtaggtaaacgatccctcaacagtcgtcaagccaagatagaaacttttaaaggaacctgtttatgccagattaactccatagtttgatg 14439865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 51052424 - 51052614
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || ||| ||||||| |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  51052424 acatcttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 51052523  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  51052524 gaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 51052614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 11909301 - 11909111
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || ||| ||||||| | |||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  11909301 acatcttcgacaatcccacatccagaaacacatagccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 11909202  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  11909201 gaagtcgccaagcaatgatagatactttgagaggaacctgtttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 11909111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 35541033 - 35541183
Alignment:
Q  54 cctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctg 153  Q
    |||||| || || ||||||||||||||||||||||| |||||| |||||| ||||||| || |||||||||||||||||||| ||||||| ||| |||||    
T  35541033 cctccacagatagaatgccacgatttgccaaattatgttttgtgggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctg 35541132  T
Q  154 tttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    ||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  35541133 tttatgccaaattaagtccatattatggtgtaactggggctgctcctgtga 35541183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 6050547 - 6050737
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || |||||||| |||||||||||||  ||||||||||||| ||||||| |    
T  6050547 acatcttcgacaatcccacatccagcaacgcagaaccgctcctccacagatagaatgccacaatttgccaaattaagttttgtaggtaaccgatccctca 6050646  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  6050647 ttagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtccacattatggtgtaactggggctgctcctgtga 6050737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 16917938 - 16917836
Alignment:
Q  81 ccaaattattttttgtaggtaactgatccctaagaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttg 180  Q
    ||||||||  ||| ||||||||  ||||||| |  |||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||    
T  16917938 ccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttg 16917839  T
Q  181 atg 183  Q
    |||    
T  16917838 atg 16917836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 43388415 - 43388480
Alignment:
Q  118 tcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    |||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  43388415 tcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 43388480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 47623271 - 47623083
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||| ||| ||| |||||| |||||||  ||||| |||||| ||| | |||| |||| |||||||||||    || ||||||||  | ||||| |    
T  47623271 acatcttcatcatgcccacaaccagaaacaca--accgcccctccataggaataatgtcacggtttgccaaatttcccttcgtaggtaagcggtccctca 47623174  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||| ||||||||||| ||||| ||||||| ||| |||||||||||| ||||||| ||||||| |  ||||||||| || || ||||||||    
T  47623173 aaagccgccaagcaagaatagatactttgagaggtacctgtttatgccaaattaattccatatatgaatgtaactgaggttgttcctgtga 47623083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 28351776 - 28351828
Alignment:
Q  132 tagagactttgataggaacctgtttatgcaaaattaactccatattttgatgt 184  Q
    |||||||||| | ||| ||| |||||||| |||||||||||||||||||||||    
T  28351776 tagagactttcagagggaccggtttatgccaaattaactccatattttgatgt 28351828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 37191301 - 37191237
Alignment:
Q  119 cgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatg 183  Q
    ||||||||||||||| | ||||| | | ||||| |||||||| | ||||||||||||||||||||    
T  37191301 cgccaagcaaggatataaacttttaaatgaaccagtttatgccagattaactccatattttgatg 37191237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 3196 - 3386
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    ||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||| | |||||||||||  |||| ||||||||| |||| || |    
T  3196 acatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccatggtttgccaaattgcttttcgtaggtaaccgatctctca 3295  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
     ||||| ||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||| || ||||||| ||| |||||||||||    
T  3296 aaagtctccaagcaaggatagaaactttaagaggaacctgtttatgccaaattaactccatattatggtgtaactagggttgctcctgtga 3386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 11401 - 11211
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||| ||| |||||||| || ||| ||||||| |||||| |||||| || || ||||||||| ||||||||||||  ||||||||||||| ||||||| |    
T  11401 acattttcgacattcccacatccagaaacacataaccgctcctccacagatagaatgccacggtttgccaaattaagttttgtaggtaaccgatccctga 11302  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||| ||| || |||| ||||| ||||||||||||    
T  11301 gaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccagattatggtgtagctgggtctgctcctgtga 11211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 106039 - 105849
Alignment:
Q  14 acatcttcaacattcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaactgatccctaa 113  Q
    |||||||| ||| |||| || |||  ||| || |||||| |||||| || || ||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  106039 acatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctca 105940  T
Q  114 gaagtcgccaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactggggctgctcctgtga 204  Q
      |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| ||| || |||||||||||||||||||||||    
T  105939 ttagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtccacattatggtgtaactggggctgctcctgtga 105849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1479 times since January 2019
Visitors: 1299