View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_1D_low_34 (Length: 203)
Name: NF0063_1D_low_34
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_34 |
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| [»] chr2 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25202985 - 25203187
Alignment:
| Q |
1 |
tcacaatgcaactaaccaaaatgattttcaacaacatagttttgtaatggagtgcactctctagtacgaattcctatgatctcaatccattcaccctgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25202985 |
tcacaatgcaactaaccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaatacctatgatctcaatccattcaccctgat |
25203084 |
T |
|
| Q |
101 |
agtcgaaacacannnnnnnctcaactcaatcgatgcaagtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgcgcaactcaaa |
200 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
25203085 |
agtcgaaacacatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgccctactcaaa |
25203184 |
T |
|
| Q |
201 |
aag |
203 |
Q |
| |
|
||| |
|
|
| T |
25203185 |
aag |
25203187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 43011506 - 43011304
Alignment:
| Q |
1 |
tcacaatgcaactaaccaaaatgattttcaacaacatagttttgtaatggagtgcactctctagtacgaattcctatgatctcaatccattcaccctgat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |||| |
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| T |
43011506 |
tcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgccttgat |
43011407 |
T |
|
| Q |
101 |
agtcgaaacacannnnnnnctcaactcaatcgatgcaagtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgcgcaactcaaa |
200 |
Q |
| |
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||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43011406 |
agtcgaaacgcatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaactcaaa |
43011307 |
T |
|
| Q |
201 |
aag |
203 |
Q |
| |
|
||| |
|
|
| T |
43011306 |
aag |
43011304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 43013803 - 43013601
Alignment:
| Q |
1 |
tcacaatgcaactaaccaaaatgattttcaacaacatagttttgtaatggagtgcactctctagtacgaattcctatgatctcaatccattcaccctgat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |||| |
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| T |
43013803 |
tcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgccttgat |
43013704 |
T |
|
| Q |
101 |
agtcgaaacacannnnnnnctcaactcaatcgatgcaagtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgcgcaactcaaa |
200 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43013703 |
agtcgaaacgcatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaactcaaa |
43013604 |
T |
|
| Q |
201 |
aag |
203 |
Q |
| |
|
||| |
|
|
| T |
43013603 |
aag |
43013601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35075474 - 35075408
Alignment:
| Q |
1 |
tcacaatgcaactaaccaaaatgattttcaacaacatagttttgtaatggagtgcactctctagtac |
67 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35075474 |
tcacaatgcaactgaccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtac |
35075408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 35075412 - 35075347
Alignment:
| Q |
138 |
agtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgcgcaactcaaaaag |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
35075412 |
agtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcccaactcaaaaag |
35075347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25675862 - 25676064
Alignment:
| Q |
1 |
tcacaatgcaactaaccaaaatgattttcaacaacatagttttgtaatggagtgcactctctagtacgaattcctatgatctcaatccattcaccctgat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |||| |
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| T |
25675862 |
tcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgccttgat |
25675961 |
T |
|
| Q |
101 |
agtcgaaacacannnnnnnctcaactcaatcgatgcaagtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgcgcaactcaaa |
200 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25675962 |
agtcgaaacgcatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaactcaaa |
25676061 |
T |
|
| Q |
201 |
aag |
203 |
Q |
| |
|
||| |
|
|
| T |
25676062 |
aag |
25676064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 15090169 - 15090376
Alignment:
| Q |
1 |
tcacaatgcaactaaccaaaatgattttcaacaacatagttttgtaatggagtgcactctctagtacgaattcctatgatctcaatccattcaccctgat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
15090169 |
tcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggattgcactct--agtacgaattcctctgatctcaatccattcaccctgat |
15090266 |
T |
|
| Q |
101 |
agtcgaaacac-------annnnnnnctcaactcaatcgatgcaagtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgcgca |
193 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
15090267 |
agtcgaaacactttttttttttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgccca |
15090366 |
T |
|
| Q |
194 |
actcaaaaag |
203 |
Q |
| |
|
|||||||||| |
|
|
| T |
15090367 |
actcaaaaag |
15090376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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