View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_1D_low_5 (Length: 352)

Name: NF0063_1D_low_5
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_1D_low_5
NF0063_1D_low_5
[»] chr3 (3 HSPs)
chr3 (111-224)||(49866408-49866522)
chr3 (218-347)||(44989758-44989871)
chr3 (1-44)||(32511366-32511409)
[»] scaffold0268 (3 HSPs)
scaffold0268 (1-112)||(9446-9557)
scaffold0268 (1-32)||(9649-9680)
scaffold0268 (80-113)||(14192-14225)
[»] chr5 (2 HSPs)
chr5 (1-113)||(22263093-22263212)
chr5 (79-113)||(22283306-22283340)
[»] chr6 (2 HSPs)
chr6 (1-116)||(24032555-24032677)
chr6 (80-113)||(24021534-24021567)
[»] chr4 (1 HSPs)
chr4 (1-116)||(15777426-15777549)
[»] chr7 (2 HSPs)
chr7 (80-116)||(13916333-13916369)
chr7 (80-113)||(17320638-17320671)
[»] scaffold0031 (1 HSPs)
scaffold0031 (80-113)||(85065-85098)
[»] chr2 (1 HSPs)
chr2 (80-116)||(29067231-29067267)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 49866408 - 49866522
Alignment:
Q  111 aagaaagcctaaaataagtaactgttcaaaccagtacgagaaaatactattttcaaaaatgacttgag-caatgtaccaaagcttaagcaaatccattat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49866408 aagaaagcctaaaataagtaactgttcaaaccagtacgagaaaatactattttcaaaaatgacttgagccaatgtaccaaagcttaagcaaatccattat 49866507  T
Q  210 tggttgctgtgagat 224  Q
    ||||||||| |||||    
T  49866508 tggttgctgcgagat 49866522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 347
Target Start/End: Original strand, 44989758 - 44989871
Alignment:
Q  218 gtgagattgctctaggactttgtgtctttagggagtctcagttgggctcggctaggttttattttgatctggtatgcaactctgtctgtggtctatccaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||               |||||  |||||||||||||||| ||||| ||||||||||||    
T  44989758 gtgagattgctctaggactttgtgtctttagggagtctcagtta--------------ttatt--gatctggtatgcaactatgtctctggtctatccaa 44989841  T
Q  318 gaaacctcattatatgtctgtcattctctt 347  Q
    ||||||||||||||||||||||||||||||    
T  44989842 gaaacctcattatatgtctgtcattctctt 44989871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32511409 - 32511366
Alignment:
Q  1 tcatcaaacaaaaactcaaaacttgaaagtttctttgaacttca 44  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||    
T  32511409 tcatcaaacaaaagctcaaaacttgcaagtttctttcaacttca 32511366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9557 - 9446
Alignment:
Q  1 tcatcaaacaaaaactcaaaacttgaaagtttctttgaacttcaaatacctcaaaagttcatttgnnnnnnncattatagtttcacttcatcaaaatact 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  9557 tcattaaacaaaaactcaaaacttgaaagtttctttgaacttcaaatacctcaaaagttcatttgtttttttcattatagtttcacttcatcaaaatact 9458  T
Q  101 aaaaatcttgaa 112  Q
    ||||||||||||    
T  9457 aaaaatcttgaa 9446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9680 - 9649
Alignment:
Q  1 tcatcaaacaaaaactcaaaacttgaaagttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  9680 tcatcaaacaaaaactcaaaacttgaaagttt 9649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 14225 - 14192
Alignment:
Q  80 gtttcacttcatcaaaatactaaaaatcttgaag 113  Q
    |||||| |||||||||||||||||||||||||||    
T  14225 gtttcagttcatcaaaatactaaaaatcttgaag 14192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22263212 - 22263093
Alignment:
Q  1 tcatcaaacaaaaactcaaaacttgaaagtttctttgaacttcaaatacctc-------aaaagttcatttgnnnnnnncattatagtttcacttcatca 93  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||       |||||||||||||||||||||    
T  22263212 tcatcaaacaaaagctcaaaacttgaaagtttctttgaacttcaaatacctcaatacctaaaagttcatttgtttttttcattatagtttcacttcatca 22263113  T
Q  94 aaatactaaaaatcttgaag 113  Q
    ||||||||||||||||||||    
T  22263112 aaatactaaaaatcttgaag 22263093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 22283340 - 22283306
Alignment:
Q  79 agtttcacttcatcaaaatactaaaaatcttgaag 113  Q
    |||||||||||||||||||||||||||||||||||    
T  22283340 agtttcacttcatcaaaatactaaaaatcttgaag 22283306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 24032555 - 24032677
Alignment:
Q  1 tcatcaaacaaaaactcaaaacttgaaagtttctttgaacttcaaatacct-------caaaagttcatttgnnnnnnncattatagtttcacttcatca 93  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||        |||||||||||||||||||||    
T  24032555 tcatcaaacaaaagctcaaaacttgaaagtttctttgaacttcaaatacctaaatacctaaaagttcatttatttttttcattatagtttcacttcatca 24032654  T
Q  94 aaatactaaaaatcttgaagaaa 116  Q
    |||||||||||||||||||||||    
T  24032655 aaatactaaaaatcttgaagaaa 24032677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 24021534 - 24021567
Alignment:
Q  80 gtttcacttcatcaaaatactaaaaatcttgaag 113  Q
    ||||||||||||||||||||||||||| ||||||    
T  24021534 gtttcacttcatcaaaatactaaaaatgttgaag 24021567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 15777426 - 15777549
Alignment:
Q  1 tcatcaaacaaaaactcaaaacttgaaagtttctttgaacttcaaatacctc-------aaaagttcatttgnnnnnnncattata-gtttcacttcatc 92  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||       ||||||| |||||       ||||||| |||||||||||||    
T  15777426 tcatcaaacagaagctcaaaacttgaaagtttctttgaacttcaaatacctcaagacttaaaagtttatttgttattttcattatacgtttcacttcatc 15777525  T
Q  93 aaaatactaaaaatcttgaagaaa 116  Q
    ||||||||||||||||||||||||    
T  15777526 aaaatactaaaaatcttgaagaaa 15777549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 13916369 - 13916333
Alignment:
Q  80 gtttcacttcatcaaaatactaaaaatcttgaagaaa 116  Q
    |||||||||||||||||||||||||||||||||||||    
T  13916369 gtttcacttcatcaaaatactaaaaatcttgaagaaa 13916333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 17320638 - 17320671
Alignment:
Q  80 gtttcacttcatcaaaatactaaaaatcttgaag 113  Q
    ||||||||||||||||||||||||||||||||||    
T  17320638 gtttcacttcatcaaaatactaaaaatcttgaag 17320671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 85098 - 85065
Alignment:
Q  80 gtttcacttcatcaaaatactaaaaatcttgaag 113  Q
    ||||||||||||||||||||||||||||||||||    
T  85098 gtttcacttcatcaaaatactaaaaatcttgaag 85065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 29067267 - 29067231
Alignment:
Q  80 gtttcacttcatcaaaatactaaaaatcttgaagaaa 116  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29067267 gtttcacttcatcaaaatactaaaaatcttggagaaa 29067231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1276 times since January 2019
Visitors: 1296