View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_1D_low_6 (Length: 313)
Name: NF0063_1D_low_6
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_6 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 38991191 - 38990896
Alignment:
| Q |
18 |
gacatcacagtgctgagaggttctggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaa |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38991191 |
gacatcacagtgctgagaggttttggtattgtctctgacatcaccattcacagctcgttatctcataccccaccactcactattgaaggacctgtccaaa |
38991092 |
T |
|
| Q |
118 |
tgacgtctctctctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38991091 |
tgacgtctctctctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctc |
38990992 |
T |
|
| Q |
218 |
tggtagtcatggtcaagtgtatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgattagcgccactcttatgaagaaaaccaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38990991 |
tggtagtcatggtcaagtgtatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgattagcgccactcttatgaagaaaaccaa |
38990896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 299
Target Start/End: Original strand, 38954597 - 38954871
Alignment:
| Q |
31 |
tgagaggttctggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctc |
130 |
Q |
| |
|
|||||||||| ||| |||||||| | || ||||| | |||||| ||| ||| |||| |||| |||||||||||||| || |||||| ||||||||| |
|
|
| T |
38954597 |
tgagaggttccggtcttgtctctaatattaccatccgtaactcgacatctcattcccctgcactaactattgaaggacccatcaaaatgatgtctctctc |
38954696 |
T |
|
| Q |
131 |
tggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctggta---gtcat |
227 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||| || || |
|
|
| T |
38954697 |
tggcacttacatcaatcccaattctgatactgttccttctgaattcatcaccaaccctaaccattcttcttttagcattttcctatctggtaatggtaat |
38954796 |
T |
|
| Q |
228 |
---ggtcaagtgtatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgattagcgccactctt |
299 |
Q |
| |
|
||||| ||||||||||| |||||| |||| ||| | ||| |||| || ||||||||||| |||||||||| |
|
|
| T |
38954797 |
gagggtcaggtgtatggtgggattgttataggcaagataatggcttcgggtaatgttatgattaccgccactctt |
38954871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1619 times since January 2019
Visitors: 1303