View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0063_1D_low_8 (Length: 294)
Name: NF0063_1D_low_8
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_1D_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 1772783 - 1772519
Alignment:
| Q |
1 |
tcaagaaaagaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctttggaaaatgctccttcggaggaagttcaagatgtatctaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1772783 |
tcaagaaaagaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctt---------------cggaggaagttcaagatgtatctaaa |
1772699 |
T |
|
| Q |
101 |
gataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaaaatgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1772698 |
gataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaaaatgaca |
1772599 |
T |
|
| Q |
201 |
aggagccatctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaacaacctgat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1772598 |
aggagccatctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaacaacctgat |
1772519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 2534233 - 2534349
Alignment:
| Q |
61 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtc |
160 |
Q |
| |
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|||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||| || || |||||||| ||||||| || ||||||| | |
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| T |
2534233 |
ggaaaacgcttcttcagaggaagttcaagatgtatctaaagataatacagaagaaactactgaccccacggataccaaagagattcctgttgaggatgcc |
2534332 |
T |
|
| Q |
161 |
aaagagattcctgttga |
177 |
Q |
| |
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|||||||||| |||||| |
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| T |
2534333 |
aaagagattcatgttga |
2534349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 2525689 - 2525604
Alignment:
| Q |
61 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattc |
146 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
2525689 |
ggaaaatgctcattctgaggaaattcaagatgaatctaaagataattcagaagaaacggctgagcctaccgataccaaagagattc |
2525604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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