View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_1D_low_9 (Length: 282)

Name: NF0063_1D_low_9
Description: NF0063_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_1D_low_9
NF0063_1D_low_9
[»] chr3 (5 HSPs)
chr3 (13-270)||(11897148-11897405)
chr3 (12-270)||(26432588-26432846)
chr3 (85-169)||(23424570-23424654)
chr3 (12-127)||(53608336-53608451)
chr3 (12-166)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (13-270)||(23132475-23132732)
chr8 (66-169)||(26587277-26587380)
chr8 (107-265)||(14760016-14760174)
chr8 (12-103)||(38348466-38348557)
[»] chr2 (11 HSPs)
chr2 (13-270)||(14653570-14653827)
chr2 (17-166)||(26791322-26791471)
chr2 (12-163)||(40328174-40328325)
chr2 (12-163)||(35135219-35135370)
chr2 (69-178)||(16322502-16322611)
chr2 (12-163)||(3779048-3779199)
chr2 (69-166)||(573245-573342)
chr2 (13-151)||(19265413-19265551)
chr2 (21-166)||(177504-177649)
chr2 (115-166)||(35062956-35063007)
chr2 (85-171)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (13-270)||(20284849-20285106)
chr1 (11-178)||(50236550-50236717)
chr1 (11-166)||(50451893-50452048)
chr1 (69-127)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (12-163)||(54477407-54477558)
chr4 (59-169)||(14307826-14307936)
chr4 (59-169)||(14291777-14291887)
chr4 (69-166)||(3881771-3881868)
chr4 (17-169)||(46784469-46784621)
chr4 (12-103)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (76-166)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (60-166)||(32874457-32874563)
chr5 (12-166)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (12-169)||(24893833-24893990)
chr6 (85-169)||(24990660-24990744)
chr6 (69-175)||(13599639-13599745)
chr6 (69-126)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (69-172)||(16769956-16770059)
chr7 (30-163)||(1353794-1353927)
chr7 (21-166)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  |||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacc 211  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || ||| ||||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  212 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  85 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  112 tccgacaaggtgatcc 127  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| |||||||| || || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    || |||||||||||||| | || || || || |||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 26587277 - 26587380
Alignment:
Q  66 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 165  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaac 26587376  T
Q  166 tttc 169  Q
    ||||    
T  26587377 tttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 265
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  107 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 206  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  207 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 265  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 38348466 - 38348557
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttc 103  Q
    ||||||||||||||||||||||||||||| ||  | || || |  | |||||| ||||||||||| ||||  ||| | ||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttc 38348557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  17 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 116  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  117 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    || ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 40328174 - 40328325
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||| |||||||| |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 35135370 - 35135219
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 168  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  169 cagctgctat 178  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 3779199 - 3779048
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||| |||||||| |||||||||||||| ||  | || || || |||||  || | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  3779199 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcattgttatggaatggaaacaagctctctcctttcaagcctactcatggac 3779100  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779099 ttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 19265413 - 19265551
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||| |||||||| |||||||||||||| ||  | || || || |||||  || | |||||||| |||||| |  | |||||||||||| | ||||| ||    
T  19265413 acattaccatcaaactcatcatgcattgtgttacctcaccaagctactccttgttatggaatggaaacaagctctctcctttcaagcctactcatggact 19265512  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcct 151  Q
     || |||||||| ||| |||| |||||||||||||||||    
T  19265513 tcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  21 atcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 120  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  121 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  115 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  85 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 171  Q
    |||| |||||||||||  | ||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  13 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||   ||||||||||||| ||||||| ||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  113 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 212  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  213 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  11 ggacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggc 110  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||| ||||||||| |||| |||||||||||| | ||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  111 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 178  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  11 ggacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatgg 109  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | |||||||| |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  110 cctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    ||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 127  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  59 ctctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 158  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  159 gaaaagctttc 169  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 14291777 - 14291887
Alignment:
Q  59 ctctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 158  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| | || |||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatg 14291876  T
Q  159 gaaaagctttc 169  Q
    ||||| |||||    
T  14291877 gaaaaactttc 14291887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  17 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 116  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | ||||||||||| || || |||||||||||||| ||| | ||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  117 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    |||||||||||  | || || || || ||||||||||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttc 103  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||||||| || |||||||| |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  76 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  60 tctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 159  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  160 aaaagct 166  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 111  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||||||||||||  | ||  ||||||||||| | ||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  112 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  12 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggc 110  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||  | |||||||| |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  111 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  85 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 169  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 168  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  169 cagctgc 175  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 126  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  69 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 168  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  169 cagc 172  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 1353927 - 1353794
Alignment:
Q  30 atcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgt 129  Q
    |||||||||||||| || ||  | | || |||||| || | ||||||||| ||| || | || ||||||||| | |||||||||  ||||||||||||      
T  1353927 atcatgcattgcgttgcctcctccactttctctatcctctcgaatgggaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccac 1353828  T
Q  130 tgtccccttatcttttcatcctttgcatggaaaa 163  Q
    | || || ||||||||||| ||||| ||||||||    
T  1353827 tctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  21 atcaagctcatcatgcattgcgtagcttctccgagttactctatgctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 120  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||| | ||||||||||| || ||  | ||| | ||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  121 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 166  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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