View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_2D_high_1 (Length: 1352)
Name: NF0063_2D_high_1
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_high_1 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0062 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 1230; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1230; E-Value: 0
Query Start/End: Original strand, 19 - 1332
Target Start/End: Complemental strand, 33815581 - 33814268
Alignment:
| Q |
19 |
tcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815581 |
tcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctct |
33815482 |
T |
|
| Q |
119 |
cggtcattctcaagacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
218 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815481 |
tgatcattctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
33815382 |
T |
|
| Q |
219 |
tcttgagatattcttcttgtgacatccacaacattctttttaatcgatctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815381 |
tcttgagatattcttcttgtgacatccacaacattctttttgatcgatctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
33815282 |
T |
|
| Q |
319 |
agcaaaagatttgctcaatgctttcttgagagcagctatctttgctttatcttttccaacaataagcatatcatcaacatacaataaaagtatgatggac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815281 |
agcaaaagatttgctcaatgctttcttgagagcagatatctttgtcttatcttttccaacaataagcatatcatcaacatacaataaaagtatgatggac |
33815182 |
T |
|
| Q |
419 |
tctccattttcatagttcttcacaaacacacaatggtctgctgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815181 |
tctccattttcatagttcttcacaaacacacaatggtctgttgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
33815082 |
T |
|
| Q |
519 |
ttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaaccttcaggttgctccatatagatttc |
618 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33815081 |
ttggagcctgctttaagccatataaacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaacctttaggttgctccatatagatttc |
33814982 |
T |
|
| Q |
619 |
ttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctataccaaggattgctctaatggatgtc |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33814981 |
ttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctaagtctagttttgcagctagaccaaggattgctctaatggatgtc |
33814882 |
T |
|
| Q |
719 |
atcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgt |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33814881 |
atcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacttggggtttgggttgt |
33814782 |
T |
|
| Q |
819 |
tctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggattt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814781 |
tctcttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtctcattctcctttagggattt |
33814682 |
T |
|
| Q |
919 |
catctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatat |
1018 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814681 |
catctcttcttccatggattgtaaccatttttccttattggttgtctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatat |
33814582 |
T |
|
| Q |
1019 |
tcacctgagaaatatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatct |
1118 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814581 |
tcacctgagaagtatctttttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatct |
33814482 |
T |
|
| Q |
1119 |
gctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctc |
1218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814481 |
gctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctc |
33814382 |
T |
|
| Q |
1219 |
tccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttcgaaccatc |
1318 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33814381 |
tccccctgaattgtgcaccacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttcgaaccatc |
33814282 |
T |
|
| Q |
1319 |
ttcttagtagcagg |
1332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33814281 |
ttcttagtagcagg |
33814268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 19 - 855
Target Start/End: Complemental strand, 33810663 - 33809826
Alignment:
| Q |
19 |
tcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810663 |
tcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctct |
33810564 |
T |
|
| Q |
119 |
cggtcattctcaagacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
218 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810563 |
tgatcattctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
33810464 |
T |
|
| Q |
219 |
tcttgagatattcttcttgtgacatccacaacattctttttaatcgatctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810463 |
tcttgagatattcttcttgtgacatccacaacattctttttgatcgatctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
33810364 |
T |
|
| Q |
319 |
agcaaaagatttgctcaatgctttcttgagagcagctatctttgctttatcttttccaacaataagcatatcatcaacatacaataaaagtatgatggac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810363 |
agcaaaagatttgctcaatgctttcttgagagcagatatctttgtcttatcttttccaacaataagcatatcatcaacatacaataaaagtatgatggac |
33810264 |
T |
|
| Q |
419 |
tctccattttcatagttcttcacaaacacacaatggtctgctgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810263 |
tctccattttcatagttcttcacaaacacacaatggtctgttgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
33810164 |
T |
|
| Q |
519 |
ttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaaccttcaggttgctccatatagatttc |
618 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33810163 |
ttggagcctgctttaagccatataaacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaacctttaggttgctccatatagatttc |
33810064 |
T |
|
| Q |
619 |
ttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctataccaaggattgctctaatggatgtc |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33810063 |
ttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctaagtctagttttgcagctagaccaaggattgctctaatggatgtc |
33809964 |
T |
|
| Q |
719 |
atcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttg-atggcaccccttcacaacaattcgtgctttgtacctggggtttgggttg |
817 |
Q |
| |
|
|||||||||||||| || || |||| |||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| ||||| |||||||| |
|
|
| T |
33809963 |
atcttcaccaccggggaaaacattttttcaaaatcaatgcctttcttttgaagggcaccccttcacaccaattcatgctttgtacttgggggttgggttg |
33809864 |
T |
|
| Q |
818 |
ttctcttcagacttg-agtttgaacacccatttattttt |
855 |
Q |
| |
|
|| ||| | | ||| |||||||| |||||||||||||| |
|
|
| T |
33809863 |
-tccctttaaaattgaagtttgaaaacccatttattttt |
33809826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 1010; Significance: 0; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 1010; E-Value: 0
Query Start/End: Original strand, 19 - 1332
Target Start/End: Complemental strand, 1681 - 368
Alignment:
| Q |
19 |
tcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctct |
118 |
Q |
| |
|
|||||| |||||| | |||||||| || ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1681 |
tcctaccgcataagcaatgtctggtcttgtgcaaaccattgcgtacataaggcttcccacagctgaagaatagggcaccttgctcatttcttctttctct |
1582 |
T |
|
| Q |
119 |
cggtcattctcaagacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
218 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581 |
tggtcattctcaggacattgtgtcttattgagtttcaaatgaccaggtagtggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
1482 |
T |
|
| Q |
219 |
tcttgagatattcttcttgtgacatccacaacattctttttaatcgatctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
318 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481 |
tcttgatgtaatcttcttgtgacatccacaacattcttttggaacgatctctaacgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
1382 |
T |
|
| Q |
319 |
agcaaaagatttgctcaatgctttcttgagagcagctatctttgctttatcttttccaacaataagcatatcatcaacatacaataaaagtatgatggac |
418 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1381 |
agcaaaagatttactcaaagctttcttcagagcagctatctttgctttatcttttccgacaataagcatgtcatcaacatacaataagagtatgatggat |
1282 |
T |
|
| Q |
419 |
tctccattttcatagttcttcacaaacacacaatggtctgctgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281 |
tctccattttcatagttcttcacaaacacgcaatgatctgttgacgtctttgtgaaactgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
1182 |
T |
|
| Q |
519 |
ttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaaccttcaggttgctccatatagatttc |
618 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
1181 |
ttggagcctgcttcaagccatatagactttttttcaagcgacacacaaggtgttctttgcctggttcaatgaaacgttcaggttgctccatatagatttc |
1082 |
T |
|
| Q |
619 |
ttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctataccaaggattgctctaatggatgtc |
718 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1081 |
ttcctctaggtctccatgcaagaatgttgttttaacatcaagttgttctatctctaagtctagttttgcagctagaccaaggattgctctaatggatgtc |
982 |
T |
|
| Q |
719 |
atcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgt |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||| |
|
|
| T |
981 |
atcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgt |
882 |
T |
|
| Q |
819 |
tctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggattt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
881 |
tctcttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtttcattctcctttagggattg |
782 |
T |
|
| Q |
919 |
catctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatat |
1018 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
781 |
catctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctttgtgaagtttacatat |
682 |
T |
|
| Q |
1019 |
tcacctgagaaatatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatct |
1118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
681 |
tcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcatcatcatcatctgccatat |
582 |
T |
|
| Q |
1119 |
gctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctc |
1218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
581 |
gctcttcatgcattgcttgattttggtctatctgatcaggctcatccatctgattgggttctgttagctgatcacgatcgtaattcatttgaggaatctc |
482 |
T |
|
| Q |
1219 |
tccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttcgaaccatc |
1318 |
Q |
| |
|
||||| |||||| || || ||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
481 |
tccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtgtattgtctgatcttcatagaataccacatctcttcttcgaacaagt |
382 |
T |
|
| Q |
1319 |
ttcttagtagcagg |
1332 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
381 |
tttttagtagcagg |
368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 998; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 998; E-Value: 0
Query Start/End: Original strand, 19 - 1332
Target Start/End: Original strand, 54968466 - 54969779
Alignment:
| Q |
19 |
tcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctct |
118 |
Q |
| |
|
|||||| |||||| | |||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54968466 |
tcctaccgcataagcaatgtctggtcttgtgcaaaccattgcgtacataaggctacccacagctgaagaatagggcaccttgctcatttcttctttctct |
54968565 |
T |
|
| Q |
119 |
cggtcattctcaagacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54968566 |
tggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggtagtggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
54968665 |
T |
|
| Q |
219 |
tcttgagatattcttcttgtgacatccacaacattctttttaatcgatctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
318 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54968666 |
tcttgatataatcttcttgtgacatccacaacattcttttagaacgatctctaacgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
54968765 |
T |
|
| Q |
319 |
agcaaaagatttgctcaatgctttcttgagagcagctatctttgctttatcttttccaacaataagcatatcatcaacatacaataaaagtatgatggac |
418 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54968766 |
agcaaaagatttgctcaaagctttcttgagagcagctatctttgctttatcttttccaacaataagcatatcatcaacatacaataagagtatgatggat |
54968865 |
T |
|
| Q |
419 |
tctccattttcatagttcttcacaaacacacaatggtctgctgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54968866 |
tctccattttcatagttcttcacaaacacgcaatgatctgttgacatctttgtgaaatagtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
54968965 |
T |
|
| Q |
519 |
ttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaaccttcaggttgctccatatagatttc |
618 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
54968966 |
ttggagcctgttttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaatgaaaccttcaggttgctccatgtagatttc |
54969065 |
T |
|
| Q |
619 |
ttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctataccaaggattgctctaatggatgtc |
718 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
54969066 |
ttcctctagctctccgtgcaagaatgttgttttaacatcaagttgttctatttctaagtctagttttgcagttagaccaaggattgctctaatggatgtc |
54969165 |
T |
|
| Q |
719 |
atcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgt |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||| |
|
|
| T |
54969166 |
atcttcaccaccggtgagaatatttcttcaaaatcaacgtctttcttttgatggcaccccttcacgactattcgtgccttgtatctgggatttgggttgt |
54969265 |
T |
|
| Q |
819 |
tctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggattt |
918 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
54969266 |
tctcttcagacttgagtttaaacacccatttatttttcaatgccctctttccatctggtaatttgaccaggtcatacgtgtcattctcctttagggattg |
54969365 |
T |
|
| Q |
919 |
catctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatat |
1018 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
54969366 |
catctcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatat |
54969465 |
T |
|
| Q |
1019 |
tcacctgagaaatatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatct |
1118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
54969466 |
tcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcatcatcatcatctgccatat |
54969565 |
T |
|
| Q |
1119 |
gctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctc |
1218 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
54969566 |
gctcttcatgtattgcttgattttggtctacctgatcaggctcatccatctgattgggttctgttagctgatcacgatcataattcatttgaggaatctc |
54969665 |
T |
|
| Q |
1219 |
tccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttcgaaccatc |
1318 |
Q |
| |
|
||||| |||||| || || ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
54969666 |
tccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctgatcttcatagaataccacatctctacttcgaacaagt |
54969765 |
T |
|
| Q |
1319 |
ttcttagtagcagg |
1332 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
54969766 |
tttttagtagcagg |
54969779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 985 - 1330
Target Start/End: Original strand, 13563709 - 13564054
Alignment:
| Q |
985 |
ttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgt |
1084 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13563709 |
ttgaggttcgccttccttagtgaagtttacatattcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgt |
13563808 |
T |
|
| Q |
1085 |
tccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgtta |
1184 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
13563809 |
tccatctcaacatcatcatcatcatctgccatatgctcttcatgcattgcttgattttggtctatctgatcaggctcatccatctgattgggttctgtta |
13563908 |
T |
|
| Q |
1185 |
gctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatc |
1284 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |||||| || || ||||||| ||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
13563909 |
gctgatcacgatcgtaattcatttgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtgaattgtctgatc |
13564008 |
T |
|
| Q |
1285 |
ttcatagaataccacgtctctgcttcgaaccatcttcttagtagca |
1330 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
13564009 |
ttcatagaataccacatctctgcttcgaacaagtttcttagtagca |
13564054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 638 - 1109
Target Start/End: Original strand, 4283901 - 4284369
Alignment:
| Q |
638 |
aagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctataccaaggattgctctaatggatgtcatcttcaccaccggtgaga |
737 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4283901 |
aagaatgcagttttaacattaatttgttctatctctaagtctaaatttgcagttataccaaggatttctctaatggatgtcatcttcatcactggtgaga |
4284000 |
T |
|
| Q |
738 |
atatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagacttgagttt |
837 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||| |||||||| ||||||| |||| || |
|
|
| T |
4284001 |
atttttcttcaaaatcaatgcctttcttttgatggcattccttcacgac---tcgtgctttgtacctagggtttgagttgttctattcagacatgagctt |
4284097 |
T |
|
| Q |
838 |
gaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttccatggat |
937 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |||||||||||| |||||| || | ||||||||||||||| ||| ||||||| ||| || |
|
|
| T |
4284098 |
gaacacccgtttatttttcaatgccctatttccattcagtaattttaccaagtcatatgtttggttctcctttagggatggcatttcttcttgaatgcat |
4284197 |
T |
|
| Q |
938 |
tgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttc |
1037 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||| |||||||||| |||||||||||||| ||| | ||| ||||||| || |||| |||||| || || |
|
|
| T |
4284198 |
tgcagccatttttgcttattggttgtctctatggcttccatgatgctttgaggttccctttcattagtaaaatttatattttcatgtgagaagtaactct |
4284297 |
T |
|
| Q |
1038 |
ttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcat |
1109 |
Q |
| |
|
||| || | |||||||||| ||||||||||| ||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4284298 |
ttgttgatcgtctagatcttgttgatcttcttaatagaggttcttgttccatctcatcatcaccatcatcat |
4284369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 301 - 584
Target Start/End: Original strand, 4283592 - 4283876
Alignment:
| Q |
301 |
tgcacccaaatccttcatagcaaaagatttgctcaatgctttcttgagagcagctatctttgctttatcttttccaacaataagcatatcatcaacatac |
400 |
Q |
| |
|
|||||| | ||| |||||| ||||||||||||||||||| ||||||| |||| |||||| | |||||||| ||||||| || |||||| ||||||||| |
|
|
| T |
4283592 |
tgcacctagatctttcataacaaaagatttgctcaatgccttcttgatagcaattatcttggtcttatctttcccaacaacaaccatatcgtcaacatac |
4283691 |
T |
|
| Q |
401 |
aataaaagtatgatggactctccattttcatagttct-tcacaaacacacaatggtctgctgacgtctttgtgaagttgtgttgggtcatgaagagatca |
499 |
Q |
| |
|
|| |||| ||||||||| ||||||||| ||||||| | ||||||||||| | |||| |||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
4283692 |
aacaaaattatgatggattctccatttccatagttttatcacaaacacatagtggtttgctgatgtctttgtgaaattgtgttgggtcatgaagtgatcg |
4283791 |
T |
|
| Q |
500 |
aacttcttgtaccattgtcttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggtt |
584 |
Q |
| |
|
||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||| |
|
|
| T |
4283792 |
tacttcttgtaccattattttggaacatgctttaagccatatagacttttcttcaagcaacacataagatgttctttgtctggtt |
4283876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1118 - 1222
Target Start/End: Original strand, 4285562 - 4285666
Alignment:
| Q |
1118 |
tgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatct |
1217 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| |||||| ||| || ||||| ||| |||| || | ||||||| ||||| |||||| |||||||||| |
|
|
| T |
4285562 |
tgctcttcctgcattgcttggttttgttatatgtgatcaagctacttcatcttattgggttgtgctttctgatcacaatcgttattcatttgaggaatct |
4285661 |
T |
|
| Q |
1218 |
ctccc |
1222 |
Q |
| |
|
||||| |
|
|
| T |
4285662 |
ctccc |
4285666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 725; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 19 - 923
Target Start/End: Original strand, 4836800 - 4837704
Alignment:
| Q |
19 |
tcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctct |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4836800 |
tcctacaacataaccgatgtctggcctcgtgtagaccatggcgtacataaggctacccacagctgaagaatagggaaccttgctcatttcttctttctct |
4836899 |
T |
|
| Q |
119 |
cggtcattctcaagacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactt |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836900 |
tggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggtagtggaacatgcataggttttgcattatgcatgttgaacctttcaagaactt |
4836999 |
T |
|
| Q |
219 |
tcttgagatattcttcttgtgacatccacaacattctttttaatcgatctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
318 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4837000 |
tcttgatataatcttcttgtgacatccacaacattcttttagaacgatctctaacgatcttcattccaagaatcttcttcactgcacccaaatccttcat |
4837099 |
T |
|
| Q |
319 |
agcaaaagatttgctcaatgctttcttgagagcagctatctttgctttatcttttccaacaataagcatatcatcaacatacaataaaagtatgatggac |
418 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4837100 |
agcaaaagatttgctcaaagctttcttgagagcatctatctttgctttatcttttccaacaataagcatatcatcaacatacaataagagtatgatggat |
4837199 |
T |
|
| Q |
419 |
tctccattttcatagttcttcacaaacacacaatggtctgctgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4837200 |
tctccattttcatagttcttcacaaacacgcaatgatctgttgacgtctttgtgaaattgtgttgggtcatgaagagatcaaacttcttgtaccattgtc |
4837299 |
T |
|
| Q |
519 |
ttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaaccttcaggttgctccatatagatttc |
618 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
4837300 |
ttggagcctgctttaagccatatagaattttcttcaagcgacacacaaggtgttctttgcctggttcaatgaaaccttcaggttgctccatgtagatttc |
4837399 |
T |
|
| Q |
619 |
ttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctataccaaggattgctctaatggatgtc |
718 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4837400 |
ttcctctaggtctccgtgcaagaatgttgttttaacatcaagttgttctatttctaagtctagttttgcagctagaccaaggattgctctaatggatgtc |
4837499 |
T |
|
| Q |
719 |
atcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgt |
818 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||||| |||| |||||||||| |
|
|
| T |
4837500 |
atcctcaccactggtgagaatatttcttcaaaatcaatgcctttctttcgatggcaccccttcacgactatttgtgctttgtatatgggatttgggttgt |
4837599 |
T |
|
| Q |
819 |
tctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggattt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4837600 |
tctcttcagacttgagtttgaacacccacttgtttttcaacgccctctttccatctggtaattttaccagatcatacgtctcattctcctttagggattg |
4837699 |
T |
|
| Q |
919 |
catct |
923 |
Q |
| |
|
||||| |
|
|
| T |
4837700 |
catct |
4837704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 952 - 1332
Target Start/End: Original strand, 4837703 - 4838083
Alignment:
| Q |
952 |
cttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatggttgtcta |
1051 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||| ||||||| |
|
|
| T |
4837703 |
cttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcaactgagaagtatctttttgatgtttgtcta |
4837802 |
T |
|
| Q |
1052 |
gatctcgttgatcttctcaattgaggttcttgttccatctcaacatcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatct |
1151 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||| || |||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4837803 |
gatctcgttgatcttctcagttgaggttcttgtaccatctcaacatcatcaccatcatctgccatatgctcttcatgcattgcttgattttggtctatct |
4837902 |
T |
|
| Q |
1152 |
gatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttgg |
1251 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||| || || ||||| | |||||| |
|
|
| T |
4837903 |
gatcaggctcatccatctgattgggttatgttagctgatcacgatcgtaattcatttgaggaatctctccccctgaattgtgtaccacaatcgcctttgg |
4838002 |
T |
|
| Q |
1252 |
ctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtctctgcttcgaaccatcttcttagtagcagg |
1332 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
4838003 |
cttattagattgaatgtcgtggattgtctgatcttcatagaataccacatctctgcttcgaacaaacttcttagtagcagg |
4838083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 645; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 497 - 1332
Target Start/End: Original strand, 9754048 - 9754877
Alignment:
| Q |
497 |
tcaaacttcttgtaccattgtcttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaacctt |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
9754048 |
tcaaacttcttgtaccattgtcttggagcctgcttcaagccatatagacttttcttcaagcgacacacaaggtgttatttgcctggttcaatgaaacctt |
9754147 |
T |
|
| Q |
597 |
caggttgctccatatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctatacc |
696 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
9754148 |
caggttgctccatgtagatttcttcctctaggtctccgtgcaagaatgctgttttaacatcaagttgttctatctctaagtctagttttgcagctagacc |
9754247 |
T |
|
| Q |
697 |
aaggattgctctaatggatgtcatcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgct |
796 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
9754248 |
aaggattgctctaatggatgtcatcttccccaccgatgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgct |
9754347 |
T |
|
| Q |
797 |
ttgtacctggggtttgggttgttctcttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacg |
896 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
9754348 |
ttgtatctgggatttgggttgttctcttcagacttaagtttgaacacccatttatttttcaatgccctctttccatttggcaattttaccaggtcatacg |
9754447 |
T |
|
| Q |
897 |
tctcattctcctttagggatttcatctcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttcccc |
996 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
9754448 |
tctcattctcctttagggattgcatctcttcttccatggattacaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcccc |
9754547 |
T |
|
| Q |
997 |
ttcctcagtgaaatttacatattcacctgagaaatatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatctcaaca |
1096 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9754548 |
ttcctcagtgaagtttacatattcacctgagaagtatcttcttgatggttgtctagatctcgttgatcttctcaattgaggttcttgttccatc------ |
9754641 |
T |
|
| Q |
1097 |
tcaacatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgat |
1196 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||| ||| |
|
|
| T |
9754642 |
tcaacatcctcatctgccatctgctcttcatgcattgcttgattttggtctatatgatcaggctcatccatctgattgggttctgttagctgatcacgat |
9754741 |
T |
|
| Q |
1197 |
cgtaattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaatac |
1296 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || || ||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
9754742 |
cgtaattcatctgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctaatcttcatagaatac |
9754841 |
T |
|
| Q |
1297 |
cacgtctctgcttcgaaccatcttcttagtagcagg |
1332 |
Q |
| |
|
||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
9754842 |
cacatctctgcttcgaacaagcttcttagtagcagg |
9754877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 44 - 349
Target Start/End: Original strand, 25004482 - 25004785
Alignment:
| Q |
44 |
ctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcattctcaagacattgtgtct |
143 |
Q |
| |
|
|||||||| |||||| | ||| |||| ||| |||| |||||||| |||| | || | |||||||||||| ||| |||||||| ||| ||| | || |
|
|
| T |
25004482 |
ctcgtgcaaaccatgacatacgtaagactatccacaactgaagaagagggaaactaacccatttcttctttttcttggtcattccgtagatattat--ct |
25004579 |
T |
|
| Q |
144 |
tactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactttcttgagatattcttcttgtgacat |
243 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||||||| || || ||| |||| ||||||| |||||| |||| | |||| ||| |||||| |||||| |
|
|
| T |
25004580 |
tactaagtttcaaatgaccag-tagtggaacatgcacaagtggtgtattttgcacgttgaacatttcaaaaactgttttgatataaacttcttttgacat |
25004678 |
T |
|
| Q |
244 |
ccacaacattctttttaatcg--atctctaatgatcttcattccaagaatcttcttcactgcacccaaatccttcatagcaaaagatttgctcaatgctt |
341 |
Q |
| |
|
|||||||||| |||| | || |||| ||| ||| |||||| |||||| |||||||||||||||| | |||||||||||||||||| |||||| | |
|
|
| T |
25004679 |
ccacaacattattttagaacgatatctttaacgattttcatt-taagaattttcttcactgcacccatgtttttcatagcaaaagatttggtcaatgtct |
25004777 |
T |
|
| Q |
342 |
tcttgaga |
349 |
Q |
| |
|
|||||||| |
|
|
| T |
25004778 |
tcttgaga |
25004785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-112
Query Start/End: Original strand, 408 - 860
Target Start/End: Original strand, 1129775 - 1130219
Alignment:
| Q |
408 |
gtatgatggactctccattttcatagttcttcacaaacacacaatggtctgctgacgtctttgtgaagttgtgttgggtcatgaagagatcaaacttctt |
507 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| || | || | |||||| |||||||||| || || ||||||||||||||||||| ||| || |
|
|
| T |
1129775 |
gtatgatggattctccatttttatagttcttcaaaatctcatagtggtct----acgtctttgttaaattatgttgggtcatgaagagattgttcttatt |
1129870 |
T |
|
| Q |
508 |
gtaccattgtcttggagcctgctttaagccatatagacttttcttcaagcgacacacaaggtgttctttgcctggttcaacgaaaccttcaggttgctcc |
607 |
Q |
| |
|
|| |||| ||||||||| |||||||||||||||| | |||||||||||| ||||||| ||| ||| |||| |||||| || |||||||||||||||||| |
|
|
| T |
1129871 |
ttatcattatcttggagcttgctttaagccatataaaattttcttcaagcaacacacatggtattcattgcttggttctacaaaaccttcaggttgctcc |
1129970 |
T |
|
| Q |
608 |
atatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttctatctctgagtctagttttgcagctataccaaggattgctc |
707 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||||||||| || ||||||||| || |
|
|
| T |
1129971 |
atatagatttcttcttctaggtcttcatgcaagaatgatgttttaacatcaagttgttctatctgtaagtctagttttgaag----accaaggatctatc |
1130066 |
T |
|
| Q |
708 |
taatggatgtcatcttcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggg |
807 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||||||||| ||||||| |||||||||| |||||| | ||||||||||||||||||| ||| |
|
|
| T |
1130067 |
taatggatgtcatttacaccaccgatgagaatatttcttcaaaatcattgcctttattttgatggcgccccttagcgacaattcgtgctttgtacccggg |
1130166 |
T |
|
| Q |
808 |
gtttgggttgttctcttcagacttgagtttgaacacccatttatttttcaatg |
860 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1130167 |
gttcaacttgttctcttcagacttgagtttgaacatccaattatttttcaatg |
1130219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 22982393 - 22982486
Alignment:
| Q |
17 |
attcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttctt |
110 |
Q |
| |
|
|||||||| |||||| | |||||||| || ||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
22982393 |
attcctaccgcataagcaatgtctggtcttgtgcaaaccaatgcgtacataaggctacccacaacagaagaatagggcaccttgctcatttctt |
22982486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 23806015 - 23805922
Alignment:
| Q |
17 |
attcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttctt |
110 |
Q |
| |
|
|||||||| |||||| | |||||||| || ||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
23806015 |
attcctaccgcataagcaatgtctggtcttgtgcaaaccaatgcgtacataaggctacccacaacagaagaatagggcaccttgctcatttctt |
23805922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 14089317 - 14089392
Alignment:
| Q |
591 |
aaccttcaggttgctccatatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttc |
666 |
Q |
| |
|
|||| |||||||| | |||||| ||||| || |||| ||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
14089317 |
aaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttc |
14089392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 63; Significance: 1e-26; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 565 - 667
Target Start/End: Complemental strand, 74196 - 74095
Alignment:
| Q |
565 |
aaggtgttctttgcctggttcaacgaaaccttcaggttgctccatatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgt |
664 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| || ||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
74196 |
aaggtgttctttgcctggttcaatgaaaccttcaggttattctatatagatttcttcctttaagtctccatgaaagaatg-ttttttaacatcaagttgt |
74098 |
T |
|
| Q |
665 |
tct |
667 |
Q |
| |
|
||| |
|
|
| T |
74097 |
tct |
74095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 565 - 667
Target Start/End: Complemental strand, 15725643 - 15725542
Alignment:
| Q |
565 |
aaggtgttctttgcctggttcaacgaaaccttcaggttgctccatatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgt |
664 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| || ||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
15725643 |
aaggtgttctttgcctggttcaatgaaaccttcaggttattctatatagatttcttcctttaagtctccatgaaagaatg-ttttttaacatcaagttgt |
15725545 |
T |
|
| Q |
665 |
tct |
667 |
Q |
| |
|
||| |
|
|
| T |
15725544 |
tct |
15725542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 591 - 666
Target Start/End: Complemental strand, 33697378 - 33697303
Alignment:
| Q |
591 |
aaccttcaggttgctccatatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttc |
666 |
Q |
| |
|
|||| |||||||| | |||||| ||||| || |||| ||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
33697378 |
aaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttc |
33697303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University