View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_high_12 (Length: 464)

Name: NF0063_2D_high_12
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_high_12
NF0063_2D_high_12
[»] chr5 (1 HSPs)
chr5 (72-448)||(11035017-11035405)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 72 - 448
Target Start/End: Original strand, 11035017 - 11035405
Alignment:
Q  72 caagcacacacttttgttacaacctgggatggtattagtagaaccaattagaagaagacatgcaagtcgcgtgggtcttaacgcattgttctcgtttttc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11035017 caagcacacacttttgttacaacctgggatggtattagtagaaccaattagaagaagacatgcaagtcgcgtgggtcttaacgcgttgttctcgtttttc 11035116  T
Q  172 aaaagttcccaagtaaaatttttattcaggaaagtcaacaaatagaaacttgtactgcaagtaattaattaacttaatttgtatacctcattggcacgga 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11035117 aaaagttcccaagtaaaatttttattcaggaaagtcaacaaatagaaacttgtactgcaagtaattaattaacttaatttgtatacctcattggcacgga 11035216  T
Q  272 atctggaaatattattttaaagtagtactatattaggtaaaagaacatttatgaattatccttcttgcttatctgc------------ttgtttgtttgt 359  Q
    ||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||    
T  11035217 atctgcaagcattattttaaagtagtactatatcaggtaaaagaacatttatgaattatccttcttgcttatctgcttgtttgtttgtttgtttgtttgt 11035316  T
Q  360 acgtatgtttgtttgttttattattcaaatgtcatgaatttcttaccaattgtaattaattaatcaatcattacagtaatcttatttta 448  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11035317 ttgtatgtttgtttgttttattattcaaatgtcatgaatttcttaccaattgtaattaattaatcaatcattacagtaatctcatttta 11035405  T

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