View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_high_14 (Length: 389)

Name: NF0063_2D_high_14
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_high_14
NF0063_2D_high_14
[»] chr2 (3 HSPs)
chr2 (225-374)||(17523309-17523458)
chr2 (133-181)||(17523504-17523552)
chr2 (1-51)||(17523635-17523685)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 17523458 - 17523309
Alignment:
Q  225 gaaggaaaatttaatacagcttaattaccattattataaaattaattgcnnnnnnnnnnnnggattagagcttaattaatcattaatcttcctttctgac 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  17523458 gaaggaaaatttaatacagcttaattaccattattataaaattaattgctttttattttttggattagagcttaattaatcattaatcttcctttctgac 17523359  T
Q  325 attttttgccactttctgaaaatttctcacttttactatcaccacaacac 374  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17523358 attttttgccactttctgaaaatttctcacttttactatcaccgcaacac 17523309  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 17523552 - 17523504
Alignment:
Q  133 accgacatatgccacttctacgtcctcacacctcacacaaaacaacacc 181  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17523552 accgacatatgccacttctacgtcctcacacctcacacaagacaacacc 17523504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17523685 - 17523635
Alignment:
Q  1 aatacaatgccaagacatattccaaagtttctgctgagttcttcagtcact 51  Q
    ||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  17523685 aatacaatgccaagacatattccaaagtttctgctcagttcctcggtcact 17523635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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