View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_high_19 (Length: 329)

Name: NF0063_2D_high_19
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_high_19
NF0063_2D_high_19
[»] chr2 (2 HSPs)
chr2 (47-268)||(4752224-4752443)
chr2 (1-51)||(10587093-10587143)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 47 - 268
Target Start/End: Original strand, 4752224 - 4752443
Alignment:
Q  47 atatatgcaataattgaaagaaaagcaagagagtttaaatatggtaccattctgatttagcttgcaaagaatcaagtggtaaacgatgaccaagcaaatt 146  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4752224 atatatgcaataattgaaagagaagcaagagagttcaaatatggtaccattctgatttagcttgcaaagaatcaagtggtaaacgatgaccaagcaaatt 4752323  T
Q  147 tcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctataacgcgcgcgcacaca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4752324 tcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctataacgcgcgcg--caca 4752421  T
Q  247 caccacaatcaaccaaatccct 268  Q
    ||||||||||||||||||||||    
T  4752422 caccacaatcaaccaaatccct 4752443  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10587093 - 10587143
Alignment:
Q  1 atacttggaattcttcttcctgccatcaaaatccatgtcaaaaacaatata 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10587093 atacttggaattcttcttcctgccatcaaaatccatgtcaaaaacaatata 10587143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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