View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_high_21 (Length: 326)
Name: NF0063_2D_high_21
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_high_21
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 2112978 - 2112664
Alignment:
Q
1
aatcaataattaagtatgtggtcatgattttaatgagtggtattacaatcaagatttnnnnnnn-tgatattttgtcaacaaaaaagaaaatacatcttt
99
Q
||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||
T
2112978
aatcaataattaaatatgtagtcatgattttaatgagtggcattgcaatcaagattttaaaaaaatgatattttgtcaacaaaaaagaaaatacatattt
2112879
T
Q
100
ttcatttgtcaaatagaccgactaaatgcaattcaaccaaataaaacaaagcttctcacaaaaatgttttccgtcatgtcgcaaccaacatgatggctga
199
Q
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
T
2112878
t-catttgtcaaatagaccgactaaatgcaagtcaaccaaataaaacaaagcttctcacaaaaatgctttccgtcatgtcgcaa-caaaatgatggctga
2112781
T
Q
200
gcatgaacaaagctcaatttactaaaacactactaataggagtattttgctttccatttactttaaaatagagc-------gctgttatttattttagga
292
Q
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
T
2112780
gcatgaacaaagctcaatttactaaaacactgctaataggagtattttgctgtccatttactttaaaatagagcatataaagctgttatttattttaggg
2112681
T
Q
293
ttaattaagtttttagt
309
Q
|||||||||||||||||
T
2112680
ttaattaagtttttagt
2112664
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2113068 - 2113035
Alignment:
Q
1
aatcaataattaagtatgtggtcatgattttaat
34
Q
||||||||||||||||||||||||||| ||||||
T
2113068
aatcaataattaagtatgtggtcatgagtttaat
2113035
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 28388767 - 28388795
Alignment:
Q
278
ttatttattttaggattaattaagttttt
306
Q
|||||||||||||||||||||||||||||
T
28388767
ttatttattttaggattaattaagttttt
28388795
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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